PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp1g20440 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | ERF | ||||||||
Protein Properties | Length: 167aa MW: 18296.4 Da PI: 10.1624 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.7 | 1.6e-19 | 76 | 134 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpse.ng.kr...krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +g+W+AeIr+ + +g ++ r +lg+f taeeAa a+++a+ +l g Tp1g20440 76 KKFRGVRQRP-WGKWAAEIRCGKAhGGiRNggpVRLWLGTFETAEEAALAYDNAAIQLIG 134 59********.**********77755585578***********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038123 | 1.3E-35 | 1 | 167 | IPR017392 | AP2/ERF transcription factor ERF/PTI6 |
CDD | cd00018 | 1.15E-24 | 76 | 141 | No hit | No description |
SuperFamily | SSF54171 | 3.01E-18 | 77 | 142 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.4E-29 | 77 | 148 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.5E-13 | 77 | 134 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.3E-26 | 77 | 142 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.246 | 77 | 142 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-11 | 78 | 89 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-11 | 108 | 124 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
MKRIVRISFT DAEATDSSSS EDEQTESELP SRRRGKRFVK EIVIDPSDSA GNIDAGKKRF 60 KIRIPARLLA ANGKKKKFRG VRQRPWGKWA AEIRCGKAHG GIRNGGPVRL WLGTFETAEE 120 AALAYDNAAI QLIGPDAPTN FSRPKVESPA VNQDSDAGDS SASREDD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-17 | 74 | 141 | 2 | 62 | ATERF1 |
3gcc_A | 3e-17 | 74 | 141 | 2 | 62 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 56 | 76 | KKRFKIRIPARLLAANGKKKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp1g20440 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006416134.1 | 7e-95 | ethylene-responsive transcription factor ERF069 | ||||
Swissprot | Q9C995 | 9e-63 | ERF70_ARATH; Ethylene-responsive transcription factor ERF070 | ||||
TrEMBL | V4KWU5 | 2e-93 | V4KWU5_EUTSA; Uncharacterized protein | ||||
STRING | XP_006416134.1 | 3e-94 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4000 | 23 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22985.1 | 9e-48 | ERF family protein |
Publications ? help Back to Top | |||
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