PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g18890
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family Dof
Protein Properties Length: 257aa    MW: 29095.7 Da    PI: 4.6355
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g18890genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof118.62.4e-373391361
     zf-Dof  3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
               e+a +cprC s+ntkfCyynnyslsqPryfCk+CrryWtkGG+lrn+PvGgg+rk+ +s
  Tp1g18890 33 ETAPPCPRCASSNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNIPVGGGCRKRSRS 91
               56678**************************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088428.5283690IPR003851Zinc finger, Dof-type
PfamPF027011.0E-313690IPR003851Zinc finger, Dof-type
ProDomPD0074781.0E-253890IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103874IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MLPYIGHNSY QNQFPSPEME MPAKWKLSYV HEETAPPCPR CASSNTKFCY YNNYSLSQPR  60
YFCKGCRRYW TKGGSLRNIP VGGGCRKRSR SRQNSHKRFG RNENRPDGLI NQDDGSQSSP  120
AGSDIDLAAV FAQYVTDRSP SSTDNTTGSD QDSPVSPSTH ALDSLSWDIC QETDANLEFY  180
GEFNNITHTI EDQRGFGHFL HEDQEEVFEF QGLLDDKEIQ EILECSFSEE PDQLTSSGSF  240
MINGDNWSST DLTRFGI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18691KRSRSR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g18890
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0154470.0AC015447.8 Arabidopsis thaliana chromosome I BAC F24J8 genomic sequence, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankDQ4462680.0DQ446268.1 Arabidopsis thaliana clone pENTR221-At1g21340 Dof-type zinc finger domain-containing protein (At1g21340) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006416313.11e-167dof zinc finger protein DOF1.2
SwissprotP683491e-168DOF12_ARATH; Dof zinc finger protein DOF1.2
TrEMBLV4MS881e-166V4MS88_EUTSA; Uncharacterized protein
STRINGXP_006416313.11e-167(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64622643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21340.11e-171Dof family protein