PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp1g18360

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

Nin-like

Protein Properties

Length: 843aa MW: 94251.8 Da PI: 5.5155

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp1g18360	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.9	4.9e-29	555	605	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k+i+l++l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ Tp1g18360 555 DKTITLDVLRQYFAGSLKDAAKNIGVCPTTLKRICRQHGIQRWPSRKIKKV 605 689**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.2	544	625	IPR003035	RWP-RK domain
Pfam	PF02042	3.3E-25	557	605	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.23E-21	737	829	No hit	No description
SMART	SM00666	5.4E-26	743	826	IPR000270	PB1 domain
PROSITE profile	PS51745	28.794	743	826	IPR000270	PB1 domain
Pfam	PF00564	1.2E-18	744	825	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.1E-20	744	823	No hit	No description
CDD	cd06407	7.56E-43	744	824	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 843 aa Download sequence Send to blast
MEDSFLQTEN AVMDTEFMDG LLLDGCWLET TDGSEFLNLS PSTSSVSPFD PSSFMWSPTQ 60 DTSAISGVVS QIYGQDCSER SSLDEFQWNK RWWIGPGGGG SSVTERLVQA VEHIKDYTTE 120 RGSLIQLWVP VNRGGKQVLT TKEQPFSHDP TCQRLANYRE ISVNYHFSAE QDDSKALAGL 180 PGRVFLGKLP EWTPDVRFFR SEEYPRVQHA QDCDVRGTLA IPVFEQGSKI CLGVIEVVMT 240 TEMVKLRPEL ESICRALQAV DLRSTEVPIP RSLKGCDLSY KAALPEIRNL LRCACETHKL 300 PLAQTWVSCI QQSKSGCRHN DENYIHCVST IDDACYVGDP TVREFHEACS EHHLLKGQGV 360 AGKAFLTNGP CFSPDVSNYK KSEYPLSHHA NMFGLHGAVA IRLRCIHTGS ADFVLEFFLP 420 KDCDDLEEQR KMLNALSTIM AHVPRSLRTV TDKELEEESE VIEREEVTPK IENTLELHHL 480 HGNSLWSASL EEVQPIDSSN PQNLGLVFDG GHKPNDGFGL KRGFDYTEDS NVNESSTFSS 540 GYFSRMAEKK RTKADKTITL DVLRQYFAGS LKDAAKNIGV CPTTLKRICR QHGIQRWPSR 600 KIKKVGHSLQ KIQRVIDSVE GVSGPLPIGS FYANFPNLAS QSQELSQQAK TSPPPPPLQL 660 SKSPVSPYSH SSSSSQCCSS ETQLNSGATT DPSQANVGGA LKKASSEIDL QSSSLEETVL 720 TLSSLENIPQ GTQLLSSCQD DDFLRIKVSY GEENIRFRIR NSRRLTDLQW EIGKRFSIED 780 MSRYDLKYLD EDNEWVLLTC DEDVEECVDV CRTTPSHTIK LLLHVSSHHF AERSSATGYN 840 LWH

Sequence ? help Back to Top

Protein Sequence Length: 843 aa Download sequence Send to blast

MEDSFLQTEN AVMDTEFMDG LLLDGCWLET TDGSEFLNLS PSTSSVSPFD PSSFMWSPTQ  60
DTSAISGVVS QIYGQDCSER SSLDEFQWNK RWWIGPGGGG SSVTERLVQA VEHIKDYTTE  120
RGSLIQLWVP VNRGGKQVLT TKEQPFSHDP TCQRLANYRE ISVNYHFSAE QDDSKALAGL  180
PGRVFLGKLP EWTPDVRFFR SEEYPRVQHA QDCDVRGTLA IPVFEQGSKI CLGVIEVVMT  240
TEMVKLRPEL ESICRALQAV DLRSTEVPIP RSLKGCDLSY KAALPEIRNL LRCACETHKL  300
PLAQTWVSCI QQSKSGCRHN DENYIHCVST IDDACYVGDP TVREFHEACS EHHLLKGQGV  360
AGKAFLTNGP CFSPDVSNYK KSEYPLSHHA NMFGLHGAVA IRLRCIHTGS ADFVLEFFLP  420
KDCDDLEEQR KMLNALSTIM AHVPRSLRTV TDKELEEESE VIEREEVTPK IENTLELHHL  480
HGNSLWSASL EEVQPIDSSN PQNLGLVFDG GHKPNDGFGL KRGFDYTEDS NVNESSTFSS  540
GYFSRMAEKK RTKADKTITL DVLRQYFAGS LKDAAKNIGV CPTTLKRICR QHGIQRWPSR  600
KIKKVGHSLQ KIQRVIDSVE GVSGPLPIGS FYANFPNLAS QSQELSQQAK TSPPPPPLQL  660
SKSPVSPYSH SSSSSQCCSS ETQLNSGATT DPSQANVGGA LKKASSEIDL QSSSLEETVL  720
TLSSLENIPQ GTQLLSSCQD DDFLRIKVSY GEENIRFRIR NSRRLTDLQW EIGKRFSIED  780
MSRYDLKYLD EDNEWVLLTC DEDVEECVDV CRTTPSHTIK LLLHVSSHHF AERSSATGYN  840
LWH

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00154	DAP	Transfer from AT1G20640	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp1g18360

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY091015	0.0	AY091015.1 Arabidopsis thaliana putative nodule inception protein (At1g20640) mRNA, complete cds.
GenBank	AY117237	0.0	AY117237.1 Arabidopsis thaliana putative nodule inception protein (At1g20640) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006306759.1	0.0	protein NLP4
Swissprot	Q9LE38	0.0	NLP4_ARATH; Protein NLP4
TrEMBL	R0GUM3	0.0	R0GUM3_9BRAS; Uncharacterized protein
STRING	XP_006306759.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3461	26	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	0.0	Nin-like family protein