PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp1g17530 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | TALE | ||||||||
Protein Properties | Length: 548aa MW: 61783.3 Da PI: 6.4173 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 30.9 | 4.7e-10 | 380 | 417 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+++e+ LAk++gL+++qV +WF N R + Tp1g17530 380 FEHflHPYPKESEKMMLAKQTGLSKNQVANWFINARVR 417 554459******************************88 PP | |||||||
2 | BELL | 116.5 | 1.3e-37 | 241 | 312 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqelq+kk+kLl++++eVdkrY+qy++q+++++ssF++vaglgsakpYts+Al++iS hFr+L+d i+eqi Tp1g17530 241 ERQELQNKKNKLLTMVDEVDKRYNQYYHQMEALASSFDVVAGLGSAKPYTSVALNRISCHFRSLRDTIKEQI 312 79*********************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 7.4E-50 | 169 | 310 | IPR006563 | POX domain |
Pfam | PF07526 | 7.0E-47 | 175 | 308 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.552 | 358 | 421 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.6E-9 | 361 | 425 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.36E-11 | 361 | 422 | No hit | No description |
SuperFamily | SSF46689 | 2.74E-17 | 362 | 428 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.4E-27 | 364 | 427 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 9.5E-18 | 378 | 417 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 548 aa Download sequence Send to blast |
MAVYYPSNVN CYQQEPIYLN HQQQQQQQAS SSSAAASFVG ASGENVRNEM VFIPPTTGDV 60 VTGLRNLNGD VTGNGPVSSS DLSFHDGQGL SLSLGTQISV PSFHYHQYQL GFTPHPPMPV 120 KETPPFNVDE ISVKSKEMVL LGQSDPSSGY TGNGGIGFYS NYRHNETSGA FMSSVLRSRY 180 LKPVQNLLDE VVSVKKELNQ MRKKKKGEDF NNGSKETEGG GGGGEISSDS NGKSIELSTT 240 ERQELQNKKN KLLTMVDEVD KRYNQYYHQM EALASSFDVV AGLGSAKPYT SVALNRISCH 300 FRSLRDTIKE QIQIIREKLG EKGESSDEQQ GERIPRLRYL DQRLRQQRAL HQQLGMVRPA 360 WRPQRGLPEN SVSALRAWLF EHFLHPYPKE SEKMMLAKQT GLSKNQVANW FINARVRLWK 420 PMIEEMYKEE FGDESELLIS KSSQEPNSTN QEDSSSQQQQ ENNKNNNNLT YSSADTSNIA 480 FSSEPKPDRI SGNDDESQQQ QQHMNRTADY DTLMNYHGYG LDDYRYIGGT NQQDSRFSNG 540 HHLHDFVV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 2e-15 | 367 | 425 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 2e-15 | 367 | 425 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp1g17530 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK352600 | 0.0 | AK352600.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-03-C02. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006416473.1 | 0.0 | BEL1-like homeodomain protein 10 | ||||
Refseq | XP_024008357.1 | 0.0 | BEL1-like homeodomain protein 10 | ||||
Swissprot | Q9FXG8 | 0.0 | BLH10_ARATH; BEL1-like homeodomain protein 10 | ||||
TrEMBL | A0A1J3FV78 | 0.0 | A0A1J3FV78_NOCCA; BEL1-like homeodomain protein 10 | ||||
STRING | XP_006416473.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3820 | 19 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19700.3 | 0.0 | BEL1-like homeodomain 10 |
Publications ? help Back to Top | |||
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