PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp1g17110 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | ERF | ||||||||
Protein Properties | Length: 200aa MW: 22379.5 Da PI: 4.4761 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.1 | 5e-19 | 9 | 59 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGVr +k +g+Wv+eIr p++ r r++lg+++++e+Aa+a +aa +l+g Tp1g17110 9 SKYKGVRKRK-WGKWVSEIRLPNS---RERIWLGSYDSPEKAARAFDAALFCLRG 59 89*****999.**********933...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.57E-20 | 9 | 68 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 9.7E-12 | 9 | 59 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.05E-28 | 9 | 69 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.7E-28 | 10 | 68 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.4E-30 | 10 | 73 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.746 | 10 | 67 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.6E-9 | 11 | 22 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.6E-9 | 33 | 49 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MEGSSSMQSK YKGVRKRKWG KWVSEIRLPN SRERIWLGSY DSPEKAARAF DAALFCLRGG 60 GAKFNFPDNP PTINGGRNLS RSEIREAAAR FANSEENVAR EKNSTSDGRA GYEMTTQQES 120 SPSTSVASSS MMTMDIDSEF LSMLPTVGSG NFASDFGLFP GFDDFSDEYS GDRFREEISP 180 TDDYYQGDEI YDGSLYLWNF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-15 | 3 | 67 | 7 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 11 | 17 | KGVRKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00151 | DAP | Transfer from AT1G19210 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp1g17110 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY008390 | 4e-69 | AY008390.1 Arabidopsis thaliana ARF11/IAA22 gene, complete cds. | |||
GenBank | BT006191 | 4e-69 | BT006191.1 Arabidopsis thaliana clone C00087 (K) putative AP2 domain transcription factor (At1g19210) mRNA, complete cds. | |||
GenBank | CP002684 | 4e-69 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. | |||
GenBank | T29M8 | 4e-69 | AC069143.3 Sequence of BAC T29M8 from Arabidopsis thaliana chromosome 1, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006306071.1 | 1e-102 | ethylene-responsive transcription factor ERF017 | ||||
Swissprot | Q84QC2 | 1e-103 | ERF17_ARATH; Ethylene-responsive transcription factor ERF017 | ||||
TrEMBL | A0A1J3H9Y4 | 1e-105 | A0A1J3H9Y4_NOCCA; Uncharacterized protein | ||||
STRING | Bostr.7128s0526.1.p | 1e-104 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1614 | 28 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19210.1 | 1e-104 | ERF family protein |
Publications ? help Back to Top | |||
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