PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Tp1g16710 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 249aa MW: 28340.9 Da PI: 6.6795 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.9 | 6.4e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WT+eEd++lv ++ ++G g+W+ +++ g+ R++k c++rw++yl Tp1g16710 14 RGEWTEEEDQKLVAYIDEFGIGDWRFLPHRAGLQRCGKGCRLRWLNYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 44.5 | 3.5e-14 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+ E+e +++ + +G++ W++Ia+ m+ gR+++++k+ w++ Tp1g16710 67 KGKFTPKEEEDIINFHSVFGNR-WAAIAQLMP-GRSDNDIKNLWNS 110 79********************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.087 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.03E-28 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-10 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.5E-13 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.4E-22 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.33E-8 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 21.472 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 2.3E-11 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.9E-13 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.52E-7 | 69 | 109 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.0E-24 | 69 | 116 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 249 aa Download sequence Send to blast |
MGRATWFEAD GTKRGEWTEE EDQKLVAYID EFGIGDWRFL PHRAGLQRCG KGCRLRWLNY 60 LRPGVKKGKF TPKEEEDIIN FHSVFGNRWA AIAQLMPGRS DNDIKNLWNS CLKKRLERNG 120 IDPMTHQPII NLAVKTPSFT VDCGSSSSST VSPSSSSSSR SARLLNKIAA GVSSRQHGVD 180 RIKNILSDDP RITNIGVQQE EFEELKKTHG KIIASDDQED DFLMWDEEKM RRFMEEVGVM 240 DIETNGVYN |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-28 | 14 | 117 | 7 | 109 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Tp1g16710 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013603474.1 | 1e-139 | PREDICTED: transcription factor MYB34-like | ||||
Swissprot | Q9LDR8 | 2e-55 | MY102_ARATH; Transcription factor MYB102 | ||||
TrEMBL | A0A3N6S5D1 | 1e-141 | A0A3N6S5D1_BRACR; Uncharacterized protein | ||||
STRING | Bo8g068030.1 | 1e-138 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G18710.1 | 3e-87 | myb domain protein 47 |
Publications ? help Back to Top | |||
---|---|---|---|
|