PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp1g16690 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | MYB | ||||||||
Protein Properties | Length: 281aa MW: 32270.4 Da PI: 7.0062 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.8 | 3.2e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd++l ++k++G+ +W + +++ g+ R +k+c++rw++yl Tp1g16690 14 KGEWTVEEDQKLSTYIKEHGTCNWGSLPKKAGLQRRGKSCRLRWLNYL 61 799*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.6 | 5.3e-17 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+ E+e +++ ++ lG++ W++I+++m+ +Rt++++k++w++ Tp1g16690 67 RGKFTPREEEDIIKFHAVLGNR-WASISKRMP-NRTDNDIKNHWNSC 111 89********************.*********.***********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.123 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.72E-27 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.8E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.7E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-21 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.60E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.89 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 3.6E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-15 | 67 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-24 | 69 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.67E-9 | 69 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MGRMTSIDED GMKKGEWTVE EDQKLSTYIK EHGTCNWGSL PKKAGLQRRG KSCRLRWLNY 60 LKPGIKRGKF TPREEEDIIK FHAVLGNRWA SISKRMPNRT DNDIKNHWNS CLKKRLERKG 120 LDPMTHEPII INLSVKTETT PNVECHSCST STWPSLASPS SSPSSALARL LNKLAAGISS 180 RQHDLDRIKN ILSDRKITRS DHEDEKLKEV EEELKKDDEG KEDDIPKWNE EELRRFMEID 240 VMDYETTSSN GSFAFLESSV SPPYGIDHSV LYESNILDHL L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-27 | 12 | 117 | 5 | 109 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp1g16690 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013584516.1 | 1e-114 | PREDICTED: transcription factor MYB34-like | ||||
TrEMBL | A0A0D3CBB1 | 1e-112 | A0A0D3CBB1_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g025730.1 | 1e-113 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18710.1 | 1e-100 | myb domain protein 47 |