PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g15990
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family HD-ZIP
Protein Properties Length: 693aa    MW: 77592.1 Da    PI: 6.8975
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g15990genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.21.6e-192576556
               SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
               +++t++q+++Le+ F+++++p++++r +L+k+lgL  rq+k+WFqNrR+++k
  Tp1g15990 25 HRHTPHQIQRLESTFNECQHPDEKQRMQLSKELGLAPRQIKFWFQNRRTQKK 76
               689**********************************************988 PP

2START152.92.8e-482154362206
                HHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECT CS
      START   2 laeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddkeqWdetla....kaetleviss 87 
                +a +a++el+++ + +ep+W+k     + +n + +  +f++s +       +++ea r sg+v+ ++++lv  l+d+  ++ e ++    + +tl+viss
  Tp1g15990 215 IAVTAMEELLRLTQTNEPLWMKTNgcrDVLNLESYENIFPRSSSrggknhnYRVEATRSSGIVFTNAMTLVDMLMDSV-KFAELFPsivaASKTLAVISS 313
                6889**********************999**********9998899********************************.66666666666********** PP

                T......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX.HH CS
      START  88 g......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp.hw 179
                g       al+l   elq+lsplvp R+f ++Ry++q + g+w+iv vS + +q+ + +    R+ ++pSg+li+++sng+skvtwvehv+ +++ p h+
  Tp1g15990 314 GlrrnhgDALHLVLEELQVLSPLVPtREFSVLRYCQQIEHGTWAIVNVSYEFPQFIS-H---SRSYRFPSGCLIQDMSNGYSKVTWVEHVEIEEQEPiHE 409
                ******99***********************************************98.4...56666********************************* PP

                HHHHHHHHHHHHHHHHHHHHTXXXXXX CS
      START 180 llrslvksglaegaktwvatlqrqcek 206
                +++  v+ gla+ga +w atlqr ce+
  Tp1g15990 410 IFKDNVREGLAFGAERWIATLQRMCER 436
                *************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-21772IPR009057Homeodomain-like
SuperFamilySSF466891.67E-19878IPR009057Homeodomain-like
PROSITE profilePS5007117.7341878IPR001356Homeobox domain
SMARTSM003891.7E-181982IPR001356Homeobox domain
PfamPF000464.0E-172576IPR001356Homeobox domain
CDDcd000866.69E-182579No hitNo description
PROSITE patternPS0002705376IPR017970Homeobox, conserved site
PROSITE profilePS5084849.352205439IPR002913START domain
SuperFamilySSF559612.75E-29206437No hitNo description
CDDcd088751.50E-104209435No hitNo description
SMARTSM002342.6E-33214436IPR002913START domain
PfamPF018521.6E-40215436IPR002913START domain
Gene3DG3DSA:3.30.530.203.7E-6262402IPR023393START-like domain
SuperFamilySSF559614.94E-16491684No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010091Biological Processtrichome branching
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 693 aa     Download sequence    Send to blast
MEFLGDSQNH DSSETDKKKK KKRFHRHTPH QIQRLESTFN ECQHPDEKQR MQLSKELGLA  60
PRQIKFWFQN RRTQKKAQHE RADNCALKEE NDKIRCENIA IREAIKHAIC PNCGDAPVHE  120
DSYFDEQKLR IENAQLREEL ERVSGIAAKF MGRPFSHLQP LLNPMHISSL ELFHSGPSLD  180
FDLLPGSCSS LAVPTLPSQP NLVLSDMDKS LMTSIAVTAM EELLRLTQTN EPLWMKTNGC  240
RDVLNLESYE NIFPRSSSRG GKNHNYRVEA TRSSGIVFTN AMTLVDMLMD SVKFAELFPS  300
IVAASKTLAV ISSGLRRNHG DALHLVLEEL QVLSPLVPTR EFSVLRYCQQ IEHGTWAIVN  360
VSYEFPQFIS HSRSYRFPSG CLIQDMSNGY SKVTWVEHVE IEEQEPIHEI FKDNVREGLA  420
FGAERWIATL QRMCERFTAL LEPTTSSRDL KGGKRSIMRL AHRMVSNFCL SVGTSNNTRS  480
MVISGLNEFG IRVTSYKSQY EPNGMILCAA TSFWLSVSPQ NVFNFLKDER TRPQWDVLLN  540
GNSVQEVAHI ANGSHPGNCI SVLRGFNASS SQNNMLILQE SCVDSSASLV VYTPVDLPAL  600
NMAMSGQDTS YIPILSSGFA VLPDGTRNNQ TAELKVEGGG EGGGGSLITV GFQIMVNSLQ  660
SAKLNMESME TVNNLISTTV HQIKTTLNCP STA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11622KKKKKKR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as negative regulator of trichome branching in association with HDG11 (PubMed:16778018). May regulate cell differentiation and proliferation during root and shoot meristem development (PubMed:25564655). Acts as positive regulator of SCL18/LAS expression (PubMed:25358340). {ECO:0000269|PubMed:16778018, ECO:0000269|PubMed:25358340, ECO:0000269|PubMed:25564655}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g15990
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934650.0AB493465.1 Arabidopsis thaliana At1g17920 mRNA for hypothetical protein, partial cds, clone: RAAt1g17920.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006416656.20.0homeobox-leucine zipper protein HDG12
SwissprotQ9LMT80.0HDG12_ARATH; Homeobox-leucine zipper protein HDG12
TrEMBLV4KUN50.0V4KUN5_EUTSA; Uncharacterized protein
STRINGXP_006416656.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30042665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17920.10.0homeodomain GLABROUS 12
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Tian C, et al.
    An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation.
    Mol. Syst. Biol., 2014. 10: p. 755
    [PMID:25358340]
  3. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]