PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g15160
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family STAT
Protein Properties Length: 679aa    MW: 76895.8 Da    PI: 5.1392
Description STAT family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g15160genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1STAT183.52.7e-572263431118
       STAT   1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklkkypflea 100
                ldvvl+na+gqpv+kdv+vvasLlyadsg++vek++d+eapLLi+y+Gvefs+ed+p+ ll+G+asfklkisq  sk+d+rLf+ikfeip+  +ypflea
  Tp1g15160 226 LDVVLSNAIGQPVHKDVKVVASLLYADSGTPVEKTSDSEAPLLIRYEGVEFSAEDKPCSLLNGCASFKLKISQHYSKSDERLFCIKFEIPNKGSYPFLEA 325
                8*************************************************************************************************** PP

       STAT 101 vskpirCisrsrntrsss 118
                v+++irCi ++r++ +s+
  Tp1g15160 326 VTNQIRCILKTRDSVTSK 343
                ************987765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.60.120.2000.00123145IPR013320Concanavalin A-like lectin/glucanase domain
SuperFamilySSF498993.96E-729165IPR013320Concanavalin A-like lectin/glucanase domain
CDDcd103381.10E-67574679No hitNo description
Gene3DG3DSA:3.30.505.104.7E-9581642IPR000980SH2 domain
SuperFamilySSF555501.57E-11582672IPR000980SH2 domain
PROSITE profilePS5000110.39585679IPR000980SH2 domain
Sequence ? help Back to Top
Protein Sequence    Length: 679 aa     Download sequence    Send to blast
MAGDCAIDID KYSLLEDFNV DVEVENQEFE TFSLCFWVYL LDSTTYPSTI IRQVHSDMSV  60
SAPFLVLDEN KKMILLPLTL LHKEAPDPVN TSSWTEVPNV STKAEFPLQK WVHVGCEVSR  120
NYMRLHICGE IVGEQVLTSL MTNGTSSDCA RKISLFSVGG DGYSVQGFIH FAEVLPSTIP  180
VKNHYKKDPP LWLSVEKPST SGIELDEDGV WSIVGGKVSC GKIFSLDVVL SNAIGQPVHK  240
DVKVVASLLY ADSGTPVEKT SDSEAPLLIR YEGVEFSAED KPCSLLNGCA SFKLKISQHY  300
SKSDERLFCI KFEIPNKGSY PFLEAVTNQI RCILKTRDSV TSKRLKHIDH PLDDRVPEVA  360
SSNGASELQH SSSSMKRIRL GEERISESEF ENGTDTSMEW RPQNHEEEED NSSTDSENTN  420
IRDSTVFRKY TISDSTIFRY CLGNLTERSL LLKEITNNSQ DEEVSEFADQ VSLYSGCSHH  480
GYQIKMARNL IAEGTNAWIL ISRNYQHVHW DNVVIEIEEH FMRIAKCSSR SLTHQDFELL  540
RRLCGCYEYI TQENFEKMWC WLFPVASAIS RGLINGMWRS SSPKWIEGFV TKEEAEHSLQ  600
SQEPGTFILR FPISRSWPHP DAGSLVVTYV GHDFVIHHRL LTVDHICDSS ERYTDAKPLQ  660
DMLLAEPELS RLGRIIRSI
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g15160
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0461800.0BT046180.1 Arabidopsis thaliana unknown protein (At1g17040) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024008335.10.0SH2 domain-containing protein A
SwissprotB5X5610.0SHA_ARATH; SH2 domain-containing protein A
TrEMBLV4KYL30.0V4KYL3_EUTSA; Uncharacterized protein
STRINGXP_006416749.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52052645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17040.10.0SH2 domain protein A
Publications ? help Back to Top
  1. Yamada Y,Wang HY,Fukuzawa M,Barton GJ,Williams JG
    A new family of transcription factors.
    Development, 2008. 135(18): p. 3093-101
    [PMID:18701541]