PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g13120
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family NF-YB
Protein Properties Length: 439aa    MW: 51146.6 Da    PI: 6.3367
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g13120genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB133.56.4e-421781794
      NF-YB 17 mkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94
               m+ vlPanaki+kdaket+qecvsefisf+tseasdkc+rekrkting d+lwa++t+Gf+dyv pl+vyl++yr++ 
  Tp1g13120  1 MRTVLPANAKIAKDAKETMQECVSEFISFITSEASDKCKREKRKTINGYDVLWAMSTIGFDDYVGPLHVYLMRYRDII 78
               899************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471139.89E-28178IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.7E-37180IPR009072Histone-fold
PfamPF008084.8E-19155IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006156.7E-151937No hitNo description
PROSITE patternPS0068502238IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006156.7E-153856No hitNo description
PRINTSPR006156.7E-155775No hitNo description
PfamPF098082.1E-43154361IPR019188Small nuclear RNA activating complex (SNAPc), subunit SNAP43
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MRTVLPANAK IAKDAKETMQ ECVSEFISFI TSEASDKCKR EKRKTINGYD VLWAMSTIGF  60
DDYVGPLHVY LMRYRDIISA FNSLTHYVFS FYATWIGIMQ PEASHMMVQK PNAEYKKERE  120
TIMNKRKDWE LFPFNEKAQG KKKLHTSGTN ISLFKRDIDE LINEFVEAFN LLSHWFYFQG  180
DFTTYADMTR VWLSRKFSYV YEAIPNSNLA FFMQSLYAHT IGHMVSIDSF SRRLGGLYCL  240
YCLHEIQPFK PKFRIYISLQ EVGKFRDLIV EAKDKGIEIA TAVAKQMLDK NAFIFGAVDF  300
DEASETEKLH QSTELQNVLL QCAYRKLISE TEIEQFIHLD MGNEVDLSSL HKMSRGYTEA  360
KKRALKSPGK IVLIEDIKHI AEEKELMGER VEKLKEEWDS QKLSFYEKTK LDTTQKLVKD  420
VEHGEDDGFD ELDRLLSES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A2e-311762297NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g13120
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018480965.11e-180PREDICTED: uncharacterized protein LOC108851983 isoform X1
RefseqXP_018480966.11e-180PREDICTED: uncharacterized protein LOC108851983 isoform X1
RefseqXP_018480968.11e-180PREDICTED: uncharacterized protein LOC108851983 isoform X1
TrEMBLV4LZ391e-168V4LZ39_EUTSA; Uncharacterized protein
STRINGXP_006403710.11e-169(Eutrema salsugineum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53340.12e-40nuclear factor Y, subunit B10