PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp1g11460 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | ERF | ||||||||
Protein Properties | Length: 242aa MW: 26968.9 Da PI: 5.6569 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.5 | 1.4e-17 | 20 | 69 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y GVr+++ +gr++AeIr + + r++lg+f+taeeAa a++ a++++ g Tp1g11460 20 KYLGVRRRP-WGRYAAEIRNpF-----TkERHWLGTFDTAEEAALAYDVAARSISG 69 799******.**********66.....34**********************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.3E-27 | 20 | 76 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.745 | 20 | 77 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.66E-20 | 20 | 76 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.3E-31 | 20 | 83 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.98E-29 | 20 | 76 | No hit | No description |
Pfam | PF00847 | 2.4E-11 | 20 | 68 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.7E-9 | 21 | 32 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.7E-9 | 43 | 59 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MLKSRNKSRS KQEKKSQEVK YLGVRRRPWG RYAAEIRNPF TKERHWLGTF DTAEEAALAY 60 DVAARSISGS LAKTNFICTG NSSLERQPQQ LLQSSSDKDF VNPFVSLGHN MSLGSSSFCF 120 LQDQPQENNY FVAGSISSFL QEQQFSANLT NGFSHCYDDD HVGKSKEISL PSFPSDMSSS 180 LFGRQDKTGE HGNADQMKFG SVLSDEAYCF EYDFLLSDMP LSLLSDVNGD PPQVIGSSSS 240 FI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-17 | 16 | 76 | 10 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp1g11460 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493454 | 1e-94 | AB493454.1 Arabidopsis thaliana At1g12890 mRNA for hypothetical protein, partial cds, clone: RAAt1g12890. | |||
GenBank | CP002684 | 1e-94 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. | |||
GenBank | F13K23 | 1e-94 | AC012187.3 Sequence of BAC F13K23 from Arabidopsis thaliana chromosome 1, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018439956.1 | 1e-128 | PREDICTED: ethylene-responsive transcription factor ERF088 | ||||
Swissprot | Q3E703 | 1e-105 | ERF88_ARATH; Ethylene-responsive transcription factor ERF088 | ||||
TrEMBL | V4KZT4 | 1e-122 | V4KZT4_EUTSA; Uncharacterized protein | ||||
STRING | XP_006417179.1 | 1e-123 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12890.1 | 7e-74 | ERF family protein |