PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp1g11440 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | bHLH | ||||||||
Protein Properties | Length: 470aa MW: 51725.8 Da PI: 5.5021 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.9 | 1.3e-11 | 290 | 332 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+++N+++ Lr+++Pk + K++ a+iL A++Y+k+L Tp1g11440 290 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIDYLKEL 332 79*********************66......****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.866 | 283 | 332 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.02E-17 | 286 | 357 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.2E-14 | 289 | 338 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.1E-9 | 289 | 332 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.56E-13 | 290 | 336 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 8.2E-16 | 290 | 347 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 8.30E-7 | 399 | 459 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010444 | Biological Process | guard mother cell differentiation | ||||
GO:0050826 | Biological Process | response to freezing | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 470 aa Download sequence Send to blast |
MNGDRVWLHD AGEQSQAPND GGAGDNDESA SWVRNPEENW FSNPQPPNPH DSQILNNNQN 60 DFRFSGGFPL TPSENLLLLL QESIDSSSPL QHFTLDAAPQ QQQQQSFLAT KACIASLLNV 120 PTSNNNNNNN PFDEFGFDSG FLGQIHGNQT PNSMNFAGLN QGMSSPPDFL SSRQIPLPEN 180 SAGTGNGYSP LEFGGIASGV FENRAKVLKP LEVLASSGSQ PTLFQKRAAM RQSSSSKMCN 240 SESSSEMRRS RYEREIDDTS TGIIDISGLN YESDEHNKGK KKGMPAKNLM AERRRRKKLN 300 DRLYMLRSVV PKISKMDRAS ILGDAIDYLK ELLQRINDLH TELESTPPSS SSLHPLTPTP 360 QTLSYRVKEE LCPSSSLPSP KGQQARIEVK LREGKAVNIH MFCGRRPGLL LSTMRALDNL 420 GLDVQQAVIS CFNGFALDVF RAEQCQEGDD VLPEQIKAVL LDTVGYAGLV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 279 | 297 | KKKGMPAKNLMAERRRRKK |
2 | 291 | 298 | ERRRRKKL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Mediates stomatal differentiation in the epidermis probably by controlling successive roles of SPCH, MUTE, and FAMA (PubMed:18641265). Functions as a dimer with SPCH during stomatal initiation (PubMed:18641265, PubMed:28507175). {ECO:0000269|PubMed:18641265, ECO:0000269|PubMed:28507175}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp1g11440 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK118011 | 0.0 | AK118011.1 Arabidopsis thaliana At1g12860 mRNA for putative bHLH transcription factor (bHLH033), complete cds, clone: RAFL19-21-N13. | |||
GenBank | BT005377 | 0.0 | BT005377.1 Arabidopsis thaliana At1g12860 mRNA, complete cds. | |||
GenBank | EU369670 | 0.0 | EU369670.1 Arabidopsis thaliana bHLH protein (SCREAM2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006417184.1 | 0.0 | transcription factor SCREAM2 | ||||
Swissprot | Q9LPW3 | 0.0 | SCRM2_ARATH; Transcription factor SCREAM2 | ||||
TrEMBL | V4KZT9 | 0.0 | V4KZT9_EUTSA; Uncharacterized protein | ||||
STRING | XP_006417184.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1952 | 27 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12860.1 | 1e-180 | bHLH family protein |