PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp1g10880

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

NAC

Protein Properties

Length: 396aa MW: 45901.7 Da PI: 6.4329

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp1g10880	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	178.3	2e-55	7	136	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 +ppGfrFhPtdeelv++yL+kkv++k++e+ ++ik++d+yk+ePwdL++ k+ +ee+ +wyfFs++dkky+tg+r+nratk+g+Wkatg+dk+++ ++ Tp1g10880 7 VPPGFRFHPTDEELVDYYLRKKVASKRIEI-DFIKDIDLYKIEPWDLQElcKIGHEEQsDWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYL-RH 104 69**************************.99**********9544444444359*********************************.88 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrle 129 +l+g++ktLvfykgrap+g+k+dW+mheyrle Tp1g10880 105 SLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136 99**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.92E-60	5	156	IPR003441	NAC domain
PROSITE profile	PS51005	59.171	7	156	IPR003441	NAC domain
Pfam	PF02365	1.1E-28	8	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048759	Biological Process	xylem vessel member cell differentiation
GO:1901348	Biological Process	positive regulation of secondary cell wall biogenesis
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence Send to blast
MNSFSHVPPG FRFHPTDEEL VDYYLRKKVA SKRIEIDFIK DIDLYKIEPW DLQELCKIGH 60 EEQSDWYFFS HKDKKYPTGT RTNRATKAGF WKATGRDKAI YLRHSLIGMR KTLVFYKGRA 120 PNGQKSDWIM HEYRLETDEN GTPQEEGWVV CRVFKKRLAA VRRMGDYDSS PSHWYDDQLS 180 FMASELETNG PRRILPNHHH QQHHHEHHHP LPYGLNASAY ALNNPNLQCK QELELQYNHL 240 VQQHHLLHES PLSFPQLPQL ESPKIQQDNS NCNSLPYGTS NNDNNSSHIA NLQQSNLAHE 300 DQLNQGNQNL SSLYMNSGNE QTMDQVTDWR VLDKFVASQL SNEEAATASA SLQNNAKDTS 360 NVEYQVDEEK DQKRVSDMGE EYAASTSSTC QIDLWK

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence Send to blast

MNSFSHVPPG FRFHPTDEEL VDYYLRKKVA SKRIEIDFIK DIDLYKIEPW DLQELCKIGH  60
EEQSDWYFFS HKDKKYPTGT RTNRATKAGF WKATGRDKAI YLRHSLIGMR KTLVFYKGRA  120
PNGQKSDWIM HEYRLETDEN GTPQEEGWVV CRVFKKRLAA VRRMGDYDSS PSHWYDDQLS  180
FMASELETNG PRRILPNHHH QQHHHEHHHP LPYGLNASAY ALNNPNLQCK QELELQYNHL  240
VQQHHLLHES PLSFPQLPQL ESPKIQQDNS NCNSLPYGTS NNDNNSSHIA NLQQSNLAHE  300
DQLNQGNQNL SSLYMNSGNE QTMDQVTDWR VLDKFVASQL SNEEAATASA SLQNNAKDTS  360
NVEYQVDEEK DQKRVSDMGE EYAASTSSTC QIDLWK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	4e-50	6	157	14	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:25148240}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00136	DAP	Transfer from AT1G12260	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp1g10880

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT029761	0.0	BT029761.1 Arabidopsis thaliana At1g12260 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_172690.1	0.0	NAC 007
Swissprot	Q9FWX2	0.0	NAC7_ARATH; NAC domain-containing protein 7
TrEMBL	D7KNA9	0.0	D7KNA9_ARALL; Uncharacterized protein
STRING	AT1G12260.1	0.0	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2111	26	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12260.1	0.0	NAC 007

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]