PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp1g09320 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | B3 | ||||||||
Protein Properties | Length: 210aa MW: 24230.8 Da PI: 10.5402 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 55.9 | 7.9e-18 | 26 | 118 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 ffk++ +d +++++ lp +f+ ++ +k s+ +++++++g sWev++ + +++ y+ ++GW++Fv++n L e++ v+F+++g ++f v ++ Tp1g09320 26 FFKIFQGADLSSESMRALPYDFI-RNAPQKDFSRNMVIRTQWGSSWEVEI--SMNPRFyYMEKRGWNQFVSDNALGENELVTFTHKGLMCF--SVNIY 118 89999999***************.6656678999****************..999999566669********************9888999..66655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.4E-18 | 19 | 122 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.83E-18 | 21 | 124 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.84E-16 | 25 | 119 | No hit | No description |
Pfam | PF02362 | 3.4E-16 | 26 | 118 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.239 | 26 | 121 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.2E-20 | 26 | 121 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MFPKKRKIGR TSSLDQSKED RKNLSFFKIF QGADLSSESM RALPYDFIRN APQKDFSRNM 60 VIRTQWGSSW EVEISMNPRF YYMEKRGWNQ FVSDNALGEN ELVTFTHKGL MCFSVNIYKE 120 NGKEVVTPRK PRTMASLSGI KKEEGESSNK DVKKDEERGE TMGGLQLKVR SKKSKESETS 180 TKKKIKSKKV ESTVPEFNNT IRKSFLGILV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp1g09320 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022558658.1 | 7e-93 | B3 domain-containing protein At3g17010-like | ||||
Refseq | XP_022563510.1 | 7e-93 | B3 domain-containing protein At3g17010-like | ||||
Swissprot | Q9LSP6 | 8e-73 | Y3701_ARATH; B3 domain-containing protein At3g17010 | ||||
TrEMBL | A0A3P6GI56 | 1e-100 | A0A3P6GI56_BRAOL; Uncharacterized protein | ||||
STRING | Bra018430.1-P | 1e-89 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM565 | 21 | 135 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G17010.1 | 1e-65 | B3 family protein |
Publications ? help Back to Top | |||
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