PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g09290
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 439aa    MW: 49569.9 Da    PI: 6.731
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g09290genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH383e-12258300754
                HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  Er+RR+riN+++  Lr ++Pk      +K++K  +L  Av+YI++L
  Tp1g09290 258 HSERKRRERINQRIYALRAVVPKV-----TKMNKNGTLSDAVDYINEL 300
                57*********************8.....8***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.6E-158153IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000831.27E-11249305No hitNo description
SuperFamilySSF474594.58E-15250312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.262251300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-12257306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.7E-10258300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-14258313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MRGGERVKEL LRPFVDSRDW DFCVIWKLGD DPSRFIEWVG CCCSGNYIDK NIKHENVEEG  60
IERKKMGSIC RDEHNKHHIR TLACEALSHF PLFMPLYPGI HGEVVMSKSP KWLVKSGPGS  120
KQDLFSTRVL VPVHDGLVEL FSFIMKPVDE SMVDLIISRC NAFFEPFPGQ TLPFRISPRA  180
EESMSSGANL SFEGGGSSSV SNPSSESQTL FVNPNACFEE QPSCLEMNKE KHVVMQNTID  240
IKANKKLPKE NFKSKNLHSE RKRRERINQR IYALRAVVPK VTKMNKNGTL SDAVDYINEL  300
LVEKQKLEDE LSGINGIECR DIAGIIAAEE EESAIANPEA EKVSSRFNKK VNNEVNLEVH  360
KTGERDLLIR VVQEHKRDGF KRLIEAVDSC GLEIIDVNFT RLDLTVMTIL NVRANKDGIA  420
AGNLRDLLLK MMPQVTDGI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1259264ERKRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g09290
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006417445.10.0transcription factor bHLH90
SwissprotQ0WNR20.0BH090_ARATH; Transcription factor bHLH90
TrEMBLV4L7P90.0V4L7P9_EUTSA; Uncharacterized protein
STRINGXP_006417445.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69852742
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10610.10.0bHLH family protein