PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g08800
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family NF-X1
Protein Properties Length: 1110aa    MW: 121458 Da    PI: 8.2449
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g08800genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X120.21.2e-06314332119
   zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                CG+H+C+++CH GpC+ C+
  Tp1g08800 314 CGRHRCERTCHVGPCDLCQ 332
                ***************9885 PP
2zf-NF-X116.22.3e-05378395118
   zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                CG H C++ CH+GpC+ C
  Tp1g08800 378 CGTHFCSEVCHPGPCGDC 395
                ****************99 PP
3zf-NF-X121.16.8e-07437454118
   zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                CG H+C++ CH G CppC
  Tp1g08800 437 CGLHTCSEVCHAGICPPC 454
                ****************** PP
4zf-NF-X116.51.8e-05535553119
   zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                CG+H+C++ CH G CppC 
  Tp1g08800 535 CGQHSCESFCHSGHCPPCL 553
                ******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578507.24E-6135206No hitNo description
PROSITE profilePS500168.956144205IPR019787Zinc finger, PHD-finger
PROSITE profilePS500899.568147203IPR001841Zinc finger, RING-type
PROSITE patternPS013590147202IPR019786Zinc finger, PHD-type, conserved site
CDDcd060083.52E-6236297No hitNo description
SMARTSM004380.023259277IPR000967Zinc finger, NF-X1-type
PfamPF014228.3261276IPR000967Zinc finger, NF-X1-type
CDDcd060082.30E-12304352No hitNo description
SMARTSM004388.2E-4314333IPR000967Zinc finger, NF-X1-type
PfamPF014222.8E-5314331IPR000967Zinc finger, NF-X1-type
CDDcd060088.32E-8372413No hitNo description
SMARTSM004381.0E-4378397IPR000967Zinc finger, NF-X1-type
PfamPF014225.8E-4378395IPR000967Zinc finger, NF-X1-type
CDDcd060082.68E-13427474No hitNo description
SMARTSM004388.7E-5437456IPR000967Zinc finger, NF-X1-type
PfamPF014226.7E-6437454IPR000967Zinc finger, NF-X1-type
SMARTSM0043884496527IPR000967Zinc finger, NF-X1-type
PfamPF0142218496507IPR000967Zinc finger, NF-X1-type
CDDcd060089.84E-10525577No hitNo description
SMARTSM004380.0028535554IPR000967Zinc finger, NF-X1-type
PfamPF014222.9E-4535552IPR000967Zinc finger, NF-X1-type
CDDcd060085.42E-6582629No hitNo description
SMARTSM004380.079592610IPR000967Zinc finger, NF-X1-type
PfamPF0142216592609IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0054645675IPR000967Zinc finger, NF-X1-type
PfamPF014220.0043645660IPR000967Zinc finger, NF-X1-type
PfamPF01422140677703IPR000967Zinc finger, NF-X1-type
SMARTSM004380.25684705IPR000967Zinc finger, NF-X1-type
PfamPF014241.4E-4817881IPR001374R3H domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1110 aa     Download sequence    Send to blast
MSSQVRRDRP RFNHQQTWVP RGASTSVAVV NEPPLPPTNS VRISESGDAG AASRPVYLER  60
QQNGSGRPPS NQHQRSNVVG LPPPNRQRRN NAPGTLPDNR QRVASRTRPV YQGKRVAKEE  120
NVVLTDPNLP QLVQEIQEKL VKSSIECMIC YDKVGRSANI WSCSSCYSIF HMHCIKKWAR  180
APTSIDLLAE KSQGDNWRCP GCQSVQLTSS REICYRCFCG KRKDPPSDPY LTPHSCGEPC  240
GKPLEKEFAA AETTKENLCP HVCVLQCHPG PCPPCKAFAP PRPCPCGKKM ITSRCSERRS  300
VLVCGQRCDK LLNCGRHRCE RTCHVGPCDL CQVVVNATCF CKKKVETVIC GDMNVKGELK  360
AEDGVYSCSF NCGKLLECGT HFCSEVCHPG PCGDCDLLPS RVKTCYCGKT RLEEQIRRSC  420
LDPIPSCSNT CRKLLPCGLH TCSEVCHAGI CPPCLIQVNQ KCRCGSTSRT VECYITTSSE  480
TEKFVCPKPC GRKKSCGRHR CSERCCPLLN AKKNDLSGDW DPHVCQLPCG KKLRCGQHSC  540
ESFCHSGHCP PCLEMIFTDL TCACGRTSIP PPLPCGTPVP SCQLPCSISQ PCGHSATHGC  600
HFGDCPPCSA PVEKKCVGGH VVLRNIPCGL KDIRCNKICG KTRRCGMHAC ARTCHSEPCD  660
SYNESEAGLR VTCGQTCGAS RRDCKHTCAA RCHPSEPCPD SRCEFRVTIT CSCGRITATV  720
PCDAGGGSAS NLHVDSVYEA SVLQKLPTPL QPVESSRNRT PLGQRKLLCD DECAKLERKR  780
VLQDAFDITP PNLDSLHFSE NSAMTEIISD IYRRDPKWVL AVEERFKFLV LGKARGSTSA  840
LKVHVFCPMQ KDKRDTVRLL AERWKLAVSN AGWEPKRFTV VHVTQKSKQP TRIIGPRAGA  900
VSVGGPHPPS FDPLVDMDPR LVVSLLDLPR EANISALVLR FGGECELVWL NDKNALAVFH  960
DHARAATAMR RLDHGSVYQG AVVVQNGAQS PSMGNAWGKL PGGSSWDVQK GNPWKKAVIQ  1020
ESDDSWGAGD SPIGGTSTDI QASAWRSAKS NTPTVTSVNR WSVLEPEKLN TSALEPLAQT  1080
EGSSSSKAAD KQPVEGSGEE VVDDWEKVCE
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g08800
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0054890.0AC005489.1 Genomic sequence for Arabidopsis thaliana BAC F14N23 from Chromosome 1, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013640936.10.0NF-X1-type zinc finger protein NFXL1-like
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A397YZK40.0A0A397YZK4_BRACM; Uncharacterized protein
STRINGBra019958.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59552647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1