PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp1g04990 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | MYB | ||||||||
Protein Properties | Length: 260aa MW: 29710 Da PI: 6.9364 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.3 | 6.4e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd ll+ +++++G ++W++ ++ g+ R++k+c++rw +yl Tp1g04990 14 KGPWSAEEDRLLITYIRLHGHPNWRALPKLAGLLRCGKSCRLRWINYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 53.6 | 5.1e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++E+e ++++++ lG++ W++Ia++++ gRt++++k+ w+++l Tp1g04990 67 RGNFTPQEEETIINLHQILGNR-WSAIAAKLP-GRTDNEIKNVWHTHL 112 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.3E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.347 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.52E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.1E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.9E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.29E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.941 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.0E-27 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-15 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.95E-10 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MGRRPCCEKT GMKKGPWSAE EDRLLITYIR LHGHPNWRAL PKLAGLLRCG KSCRLRWINY 60 LRPDIKRGNF TPQEEETIIN LHQILGNRWS AIAAKLPGRT DNEIKNVWHT HLKKRIKQNH 120 QDQHNSQTIC NNDGKVVSSM DATRPTSPQQ QSSSSTNTSA VTTLGNNNDI SNSTNNKDSA 180 TSSSEDVFAL IDESFWSEVV SMDCNISGDE ENQEKKIENW ESSLDRNDKG YKYNHDMETW 240 FDLLTTSNRL VVEISDISEF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-25 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a regulatory role in meristem function. Functions as component of a regulatory network controlling the establishment and/or development of the shoot system by the regulation of apical meristem function (PubMed:9681014). May play a role in tolerance to boric acid (PubMed:16861809). {ECO:0000269|PubMed:16861809, ECO:0000269|PubMed:9681014}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00127 | DAP | Transfer from AT1G06180 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp1g04990 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA), drought, light and wounding in leaves. Down-regulated by drought and ABA in roots. {ECO:0000269|PubMed:9681014}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006417949.1 | 1e-148 | transcription factor MYB13 | ||||
Swissprot | Q9LNC9 | 1e-134 | MYB13_ARATH; Transcription factor MYB13 | ||||
TrEMBL | V4L200 | 1e-146 | V4L200_EUTSA; Uncharacterized protein | ||||
STRING | XP_006417949.1 | 1e-147 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06180.1 | 1e-119 | myb domain protein 13 |
Publications ? help Back to Top | |||
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