PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g04980
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 430aa    MW: 48095.8 Da    PI: 5.4515
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g04980genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.18.9e-10223264854
                HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 Er RR + +++f  Lr l+P +     +K++ a+i+ +A+++Ik+L
  Tp1g04980 223 TERERRVHFKDRFGDLRNLIPYP-----TKNDRASIVAEAIDHIKEL 264
                7**********************.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.96E-9213269No hitNo description
SuperFamilySSF474598.83E-12214280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.44215264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-9215276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-5221270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-7222264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MEGGNVFEEI GCFDPNAPAE MTVESNFSPA EPPQSVTVAG STSNSNCSLE DLSQFYFSPQ  60
DCSLAAAAAA AAPGSVHELH INATPSCDHQ FQSLMHQSFQ DTAYAQQSNN WENGYQDFVN  120
LGSNHTTPDL LSLLQLPRSS LPPFANPSLQ DLIMTSSSAS AAFDPLFHLN FPLQPPNGTL  180
LGIEDQTESN GMNNLIYAEG NNNPENGLNR KGRGSRKRKI FPTERERRVH FKDRFGDLRN  240
LIPYPTKNDR ASIVAEAIDH IKELLRTIEE FKMLVEKKRI TKQRNKRSRI GEEGDDVADE  300
NYKAQSEVME HCLINKNNNS LRCSWLKRKS KFTEVDVRIM DDEVTIKIVQ KKKINCLLFV  360
SKVIDLLQLD LHHVAGAQIG EHNSFLFNTK IGEGSSVYAS AIADRVMEEV EKQYMEALSS  420
NNGYHCYTSD
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g04980
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013584762.10.0PREDICTED: transcription factor bHLH89
RefseqXP_013696065.10.0transcription factor bHLH89
SwissprotQ9LND00.0BH089_ARATH; Transcription factor bHLH89
TrEMBLA0A078F9Z00.0A0A078F9Z0_BRANA; BnaC05g04240D protein
TrEMBLA0A0D3C8130.0A0A0D3C813_BRAOL; Uncharacterized protein
TrEMBLA0A3P6EBF70.0A0A3P6EBF7_BRAOL; Uncharacterized protein
STRINGBo5g007310.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13552696
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06170.20.0bHLH family protein
Publications ? help Back to Top
  1. Cui J, et al.
    Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development.
    Plant Cell, 2016. 28(5): p. 1078-93
    [PMID:27113773]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]