PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp1g04970

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

ERF

Protein Properties

Length: 241aa MW: 27029.7 Da PI: 4.7555

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp1g04970	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	57.5	3.4e-18	86	135	3	55
AP2 3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr ++ +g+++AeIrd + k r++lg+f+taeeAa a+++a+ +l+g Tp1g04970 86 HRGVRKRP-WGKYAAEIRDsT--R-KGIRVWLGTFDTAEEAALAYDQAAFALKG 135 8*****.******32..2.24*********************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	4.0E-29	85	144	IPR001471	AP2/ERF domain
SMART	SM00380	7.6E-37	85	149	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.524	85	143	IPR001471	AP2/ERF domain
Pfam	PF00847	1.0E-12	86	135	IPR001471	AP2/ERF domain
CDD	cd00018	3.80E-29	86	144	No hit	No description
SuperFamily	SSF54171	4.51E-22	86	145	IPR016177	DNA-binding domain
PRINTS	PR00367	2.6E-10	86	97	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.6E-10	109	125	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009723	Biological Process	response to ethylene
GO:0009753	Biological Process	response to jasmonic acid
GO:0009861	Biological Process	jasmonic acid and ethylene-dependent systemic resistance
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MESESSFFSE NPSQEFSPEN SSSTTSWSSQ ESFLWEETFL HQSFDQPFLS FSPSSYYSDD 60 FFTFGSAVIQ EEEATVAAKE EEERSHRGVR KRPWGKYAAE IRDSTRKGIR VWLGTFDTAE 120 EAALAYDQAA FALKGDLAVL NFPVEVVKES LRNIENVNLN DGESPVIALK RKHSMRNQPR 180 GKKKSSPSSS SSSSYSSSSS STLSSRSRKQ SLVMKQESNS TLVVLEDLGA EYLEELMRLC 240 S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	3e-27	82	145	11	74	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Acts as an essential integrator of the JA and ethylene signal transduction pathways. Activates the expression of the PDF1.2A gene. {ECO:0000269\|PubMed:18467450}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00023	PBM	Transfer from AT1G06160	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp1g04970

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT011001	1e-171	BT011001.1 Arabidopsis thaliana At1g06160 gene, complete cds.
GenBank	BT014958	1e-171	BT014958.1 Arabidopsis thaliana At1g06160 gene, complete cds.
GenBank	CP002684	1e-171	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBank	F9P14	1e-171	AC025290.3 Sequence of BAC F9P14 from Arabidopsis thaliana chromosome 1, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018489119.1	1e-117	PREDICTED: ethylene-responsive transcription factor ERF094-like
Swissprot	Q9LND1	5e-91	ERF94_ARATH; Ethylene-responsive transcription factor ERF094
TrEMBL	A0A1J3DTE4	1e-119	A0A1J3DTE4_NOCCA; Uncharacterized protein
TrEMBL	A0A1J3I794	1e-119	A0A1J3I794_NOCCA; Uncharacterized protein
TrEMBL	A0A1J3J9T2	1e-119	A0A1J3J9T2_NOCCA; Uncharacterized protein (Fragment)
STRING	Bra032433.1-P	1e-115	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3990	18	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06160.1	2e-72	octadecanoid-responsive Arabidopsis AP2/ERF 59

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zander M,Thurow C,Gatz C TGA Transcription Factors Activate the Salicylic Acid-Suppressible Branch of the Ethylene-Induced Defense Program by Regulating ORA59 Expression. Plant Physiol., 2014. 165(4): p. 1671-1683 [PMID:24989234] Wang F, et al. TaNAC1 acts as a negative regulator of stripe rust resistance in wheat, enhances susceptibility to Pseudomonas syringae, and promotes lateral root development in transgenic Arabidopsis thaliana. Front Plant Sci, 2015. 6: p. 108 [PMID:25774162] Lehmeyer M, et al. Functional dissection of a strong and specific microbe-associated molecular pattern-responsive synthetic promoter. Plant Biotechnol. J., 2016. 14(1): p. 61-71 [PMID:25819608] Caarls L,Pieterse CM,Van Wees SC How salicylic acid takes transcriptional control over jasmonic acid signaling. Front Plant Sci, 2015. 6: p. 170 [PMID:25859250] Wang C, et al. The Arabidopsis Mediator Complex Subunit16 Is a Key Component of Basal Resistance against the Necrotrophic Fungal Pathogen Sclerotinia sclerotiorum. Plant Physiol., 2015. 169(1): p. 856-72 [PMID:26143252] Wang C, et al. Arabidopsis Elongator subunit 2 positively contributes to resistance to the necrotrophic fungal pathogens Botrytis cinerea and Alternaria brassicicola. Plant J., 2015. 83(6): p. 1019-33 [PMID:26216741] Schmiesing A,Emonet A,Gouhier-Darimont C,Reymond P Arabidopsis MYC Transcription Factors Are the Target of Hormonal Salicylic Acid/Jasmonic Acid Cross Talk in Response to Pieris brassicae Egg Extract. Plant Physiol., 2016. 170(4): p. 2432-43 [PMID:26884488] Caarls L, et al. Assessing the Role of ETHYLENE RESPONSE FACTOR Transcriptional Repressors in Salicylic Acid-Mediated Suppression of Jasmonic Acid-Responsive Genes. Plant Cell Physiol., 2017. 58(2): p. 266-278 [PMID:27837094] He X,Jiang J,Wang CQ,Dehesh K ORA59 and EIN3 interaction couples jasmonate-ethylene synergistic action to antagonistic salicylic acid regulation of PDF expression. J Integr Plant Biol, 2017. 59(4): p. 275-287 [PMID:28168848] Van den Broeck L, et al. From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress. Mol. Syst. Biol., 2017. 13(12): p. 961 [PMID:29269383] Li X,Yang R,Chen H The Arabidopsis thaliana Mediator subunit MED8 regulates plant immunity to Botrytis Cinerea through interacting with the basic helix-loop-helix (bHLH) transcription factor FAMA. PLoS ONE, 2018. 13(3): p. e0193458 [PMID:29513733]