PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp1g04880 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | bZIP | ||||||||
Protein Properties | Length: 336aa MW: 36608.6 Da PI: 5.6675 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 31 | 5.5e-10 | 210 | 266 | 5 | 61 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l l+ l Tp1g04880 210 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLSV 266 9*******************************************9999877766655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 6.5E-15 | 206 | 270 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.749 | 208 | 271 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 6.1E-11 | 210 | 264 | No hit | No description |
Pfam | PF00170 | 9.3E-9 | 210 | 262 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 6.61E-11 | 210 | 261 | No hit | No description |
CDD | cd14703 | 1.09E-23 | 211 | 260 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
MDKEKSPAPP SGGLPPPSGR YSAFSPNGSG FAMKPESSFP HLTPSGSSSD ANRFSHDISR 60 MPDNPPKNLG HRRAHSEILT LPDDLSFDSD LGVVGAADGP SFSDETDEDL LYMYLDMDKF 120 NSSATSSSQM GEPSELAWRN ELGSTSNLQS TPGSSSERPR IRHQHSQSMD GSTTIKPEML 180 MSGNEDVSGV DSKKAISAAK LSELALIDPK RAKRIWANRQ SAARSKERKM RYIAELERKV 240 QTLQTEATSL SAQLTLLQRD TNGLSVENNE LKIRVQTMEQ QVHLQDALND ALKEEVQHLK 300 VLTGQGGVAE LRRPMSSSGQ KESVSSPDLE APSTKD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor with an activatory role. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00126 | DAP | Transfer from AT1G06070 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp1g04880 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353381 | 0.0 | AK353381.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-35-L02. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006417960.2 | 0.0 | LOW QUALITY PROTEIN: probable transcription factor PosF21 | ||||
Swissprot | Q04088 | 1e-165 | POF21_ARATH; Probable transcription factor PosF21 | ||||
TrEMBL | V4L963 | 0.0 | V4L963_EUTSA; Uncharacterized protein | ||||
STRING | XP_006417960.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2445 | 27 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06070.1 | 0.0 | bZIP family protein |
Publications ? help Back to Top | |||
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