PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g04610
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 355aa    MW: 38480.9 Da    PI: 7.6333
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g04610genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.11e-10288333655
                HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +++Er RR ri  ++ +L++l+P+     +k  s +++L +Av++Ik Lq
  Tp1g04610 288 SIAERERRTRISGKLKKLQDLVPNM----DKQTSYSDMLDLAVQHIKGLQ 333
                689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.675282332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-14285346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.44E-11286337No hitNo description
Gene3DG3DSA:4.10.280.102.2E-13287346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-12288338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-8288333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MYQSSSSTSS SSQRSSLPGG GGGGGGLIRY GSAPGSLLNS MVDEVIGGSN ARDFNYPPPD  60
NFLGHFFTGA DSSSLRSDSM TCGVNSSDGQ KHLGNNNNNN KDLLFDRSYG GFNEISQQKS  120
NEVGNSSGSY SLARQRSSPA DFFSYLSGDK NSFSLNQPTS DHYNPQGGSN AGRGQSRLKS  180
QLSFTSHDPL SRISEVNETS VHDGSGHSFS AASFGATTDS WDDGSGSIGF TVTRPTKRSK  240
DMDSGLFSQY SLPSDTSMNY MDNYMQLPED SVPCKIRAKR GFATHPRSIA ERERRTRISG  300
KLKKLQDLVP NMDKQTSYSD MLDLAVQHIK GLQHQLQDLK KEQENCTCRG SERPS
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g04610
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3531730.0AK353173.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-26-M18.
GenBankKF3175490.0KF317549.1 Brassica oleracea var. capitata PA1 (PA1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009119114.10.0PREDICTED: transcription factor bHLH128
SwissprotQ8H1020.0BH128_ARATH; Transcription factor bHLH128
TrEMBLA0A1J3CWR70.0A0A1J3CWR7_NOCCA; Uncharacterized protein
STRINGBra015456.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM117772631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.11e-175bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]