PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g03870
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C3H
Protein Properties Length: 412aa    MW: 45556.3 Da    PI: 8.54
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g03870genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.72.5e-104469126
               --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
               ++++ C+f++rtG C yG +C+++H+
  Tp1g03870 44 PGERDCQFYLRTGLCGYGTTCRYNHP 69
               5789*********************9 PP
2zf-CCCH36.58e-1289113327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                ++ C +f++tG CkyG++Ck++H++
  Tp1g03870  89 QPDCEYFLKTGACKYGSTCKYHHPK 113
                789********************96 PP
3zf-CCCH38.51.9e-12133158227
                -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                ++++C++++rtGtC++G  CkF+H++
  Tp1g03870 133 GEKPCPYYLRTGTCRFGVACKFHHPQ 158
                689*********************97 PP
4zf-CCCH37.53.9e-12260283326
                S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                ++ Crff+ tGtCkyGd Ck++H+
  Tp1g03870 260 QPQCRFFMNTGTCKYGDDCKYSHP 283
                578********************8 PP
5zf-CCCH28.42.9e-09307333127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                ++++ C +f  +G+Ck+G++CkF H++
  Tp1g03870 307 PGQPACGNFKSYGFCKFGPNCKFDHSM 333
                57899********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.5544371IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-54370IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-74569IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-54770IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.89686114IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-686113IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-989113IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-691114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-492112IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-7130160IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.939131159IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-6131158IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-10133158IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.5E-6135158IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.136257285IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-6258284IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-6259283IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-9260283IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.3E-6263282IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5303332IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.629306334IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-5306333IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-7308332IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-4312332IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MSDTQQVQSS IGSIRSSVKI EDAFRKMKVN ENGVAQSNPY PDRPGERDCQ FYLRTGLCGY  60
GTTCRYNHPT HLPQGVIYYN EELPERIGQP DCEYFLKTGA CKYGSTCKYH HPKDRNGAEP  120
VLFNVLSLPM RQGEKPCPYY LRTGTCRFGV ACKFHHPQPD SGHSAAYGMS SFPSTGLHYA  180
GGLTMMSTYG TLPRPQLPQS YVPVMVSPSQ GLLPPQSWAT YMGASNSMYN VKNQPYYTGS  240
TASMPMAVTL NGGLPEKSEQ PQCRFFMNTG TCKYGDDCKY SHPGVRIISP PPPPQNFINS  300
FVLPARPGQP ACGNFKSYGF CKFGPNCKFD HSMLPYPGLT MHSSLPTPYA SPVSSNYQRI  360
SPSPSRSGSK AMSNDKPDVK KKEMSETEKP GDDSEQMNNS QKQDFSEHSS SP
Functional Description ? help Back to Top
Source Description
UniProtPossesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g03870
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024009087.10.0zinc finger CCCH domain-containing protein 3 isoform X1
SwissprotQ94AD90.0C3H3_ARATH; Zinc finger CCCH domain-containing protein 3
TrEMBLD7KEA00.0D7KEA0_ARALL; Predicted protein
STRINGAl_scaffold_0001_4290.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23802675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.20.0C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]