PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g03270
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C2H2
Protein Properties Length: 168aa    MW: 18930.3 Da    PI: 9.6355
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g03270genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.000211941223
               EETTTTEEESSHHHHHHHHHH.T CS
    zf-C2H2  2 kCpdCgksFsrksnLkrHirt.H 23
               +C+ C+++F ++ +L +H  t H
  Tp1g03270 19 ECSFCNRTFLTPQDLISHFDTiH 41
               6*****************88877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.1621846IPR007087Zinc finger, C2H2
PROSITE patternPS0002802041IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MNGGFGMKKD LMSISNPQEC SFCNRTFLTP QDLISHFDTI HSNHHFSTFS SPAAAAPSTF  60
RHYPHLSRNP NPAFPTRNRF DVNYYRSGFI DEQGRFHKGF PAMTPAKKSN FSSGQQEKPK  120
LMDLFPSMSS EGVRTLPLLC QLEQQRPQDT ATEKGGVRSS SIDLTLRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g03270
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013658992.14e-77uncharacterized protein LOC106363864
RefseqXP_013700135.14e-77uncharacterized protein LOC106403901
TrEMBLA0A078J4Z92e-76A0A078J4Z9_BRANA; BnaC08g50080D protein
TrEMBLA0A3P6GSX72e-76A0A3P6GSX7_BRAOL; Uncharacterized protein
STRINGBra032510.1-P4e-75(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM135511321
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04445.16e-51C2H2-like zinc finger protein