PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g01300
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family NAC
Protein Properties Length: 438aa    MW: 50172.9 Da    PI: 5.8119
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g01300genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM127.21.3e-3941392128
        NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.... 95 
                 pGf F+P deelv +yL++++ g++  +e +i+ev+i++++PwdL+  +k+k+++  wyfFs+r++kya+g+r++r t+sg+Wk tg++ +v+++    
  Tp1g01300   4 KPGFGFRPFDEELVGYYLRNQILGHTKLVEGAISEVNICSFDPWDLRfqSKIKSKDPVWYFFSRRENKYANGNRQSRRTRSGFWKLTGESVDVKDQwgsw 103
                59************************889899**************85348888888**************************************99999 PP

        NAM  96 ..kgelvglkktLvfykgrapkge.ktdWvmheyrl 128
                  ++ ++g k++Lvf +g++++++ k+dWvmhe++ 
  Tp1g01300 104 cgTRGKIGHKRVLVFLRGKTSSPKaKSDWVMHEFHY 139
                987788**********997666544*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100544.0293157IPR003441NAC domain
SuperFamilySSF1019411.15E-404157IPR003441NAC domain
PfamPF023657.5E-215138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MEEKPGFGFR PFDEELVGYY LRNQILGHTK LVEGAISEVN ICSFDPWDLR FQSKIKSKDP  60
VWYFFSRREN KYANGNRQSR RTRSGFWKLT GESVDVKDQW GSWCGTRGKI GHKRVLVFLR  120
GKTSSPKAKS DWVMHEFHYT LLPEHERAYV VCRLEYKGDD VNILSANATA PTPTSVPDMT  180
NSAGSVVNHS LQTNSGSYNT YSEYDQGQQF SGNFNTQQSF QGNPVPLNHF PEYDLADQGH  240
WFNGNPNLQQ QQVPYLAPYE DNSDIWKQLV EENWPYLVDE RTCMQENCSD YRPKNPVTGV  300
FADDSNDSDS DSTIGRDTWS STDSVGSKDG SYHTSVDDIP SLNTIESLHN YEAQEQPKQL  360
ELQLQGKEKV MINKQKSEHE WKMAEGSVKK APSTTVVKQS WIVLEEINQR KSQWIYLKNM  420
IIGFLLLISI IGWIVLVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-21513817139Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). {ECO:0000250|UniProtKB:Q949N0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g01300
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, drought stress and methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006418366.10.0NAC domain-containing protein 1 isoform X2
SwissprotQ0WV960.0NAC1_ARATH; NAC domain-containing protein 1
TrEMBLV4KZD40.0V4KZD4_EUTSA; Uncharacterized protein
STRINGXP_006418366.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76581640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01010.11e-160NAC domain containing protein 1
Publications ? help Back to Top
  1. Davuluri RV, et al.
    AGRIS: Arabidopsis gene regulatory information server, an information resource of Arabidopsis cis-regulatory elements and transcription factors.
    BMC Bioinformatics, 2003. 4: p. 25
    [PMID:12820902]
  2. Palaniswamy SK, et al.
    AGRIS and AtRegNet. a platform to link cis-regulatory elements and transcription factors into regulatory networks.
    Plant Physiol., 2006. 140(3): p. 818-29
    [PMID:16524982]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]