PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Tp1g00590 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 292aa MW: 32987.4 Da PI: 7.4397 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.4 | 2.4e-52 | 6 | 130 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100 lppGfrFhPtdeelv++yL++k++++++++ +i+e+d+yk++Pw+Lp+ + +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg dk++ + + v Tp1g00590 6 LPPGFRFHPTDEELVMHYLCRKCASQSISV-PIIAEIDLYKFDPWELPSLALYGEKEWYFFSPRDRKYPNGSRPNRSAGSGYWKATGADKPIGV--PKPV 102 79****************************.88***************6555689*************************************99..789* PP NAM 101 glkktLvfykgrapkgektdWvmheyrl 128 g+kk Lvfy g+apkgekt+W+mheyrl Tp1g00590 103 GIKKALVFYAGKAPKGEKTNWIMHEYRL 130 **************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.81E-62 | 3 | 157 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.341 | 6 | 157 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-27 | 7 | 130 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009788 | Biological Process | negative regulation of abscisic acid-activated signaling pathway | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 292 aa Download sequence Send to blast |
MSELQLPPGF RFHPTDEELV MHYLCRKCAS QSISVPIIAE IDLYKFDPWE LPSLALYGEK 60 EWYFFSPRDR KYPNGSRPNR SAGSGYWKAT GADKPIGVPK PVGIKKALVF YAGKAPKGEK 120 TNWIMHEYRL ADVDRSVRKK KNSLRLDDWV LCRIYNKKGA TDRRGPPTPV AYGGIADEAV 180 EEKPKLTEMG MPPPPQQTAV TNDFVYFDTS DSVPKLHTTE SSCSEQVVSP EFTSEVQSEP 240 KWKGWSAAAV NDKNTLDFGF NYLDATVDNA FGGGSNQLFP LQDMFMYMQK PY |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-80 | 2 | 158 | 11 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00121 | DAP | Transfer from AT1G01720 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Tp1g00590 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK353182 | 0.0 | AK353182.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-31-F07. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006418449.1 | 0.0 | NAC domain-containing protein 2 | ||||
Swissprot | Q39013 | 0.0 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | A0A1J3FNF0 | 0.0 | A0A1J3FNF0_NOCCA; NAC domain-containing protein 2 | ||||
STRING | XP_006418449.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM190 | 28 | 276 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G01720.1 | 0.0 | NAC family protein |