PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g00270
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C2H2
Protein Properties Length: 264aa    MW: 29438.1 Da    PI: 6.0725
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g00270genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.60.001783105123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C+ C+k+F ++  L  H  +H
  Tp1g00270  83 FQCKACKKVFASHQALGGHRASH 105
                89**************9999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.4E-982107IPR007087Zinc finger, C2H2
SuperFamilySSF576671.45E-582105No hitNo description
PROSITE profilePS5015710.01483110IPR007087Zinc finger, C2H2
SMARTSM003550.09883105IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028085105IPR007087Zinc finger, C2H2
SuperFamilySSF576671.45E-5156183No hitNo description
PfamPF139129.6E-13160184IPR007087Zinc finger, C2H2
PROSITE profilePS501579.307161183IPR007087Zinc finger, C2H2
SMARTSM003550.51161183IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280163183IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MNSSCIDFVM FSSRGQHDED SMSRRPWKRE RSNHLNLSPN EDEELANCLV LLSNSGDAYS  60
GHNSKHGHGK GKTVKKQKTG QVFQCKACKK VFASHQALGG HRASHKKVKG CFASQDKEEE  120
EEEDEYKEDD DEEEEDGDEE EEEDDKSTAA HMMGRKRSNA HECTICHRVF SSGQALGGHK  180
RCHWLTPSNY LRMTPLHDSS THQHSAARSQ PLDQPSLDLN LACQEYSVDP TVMSVGMIGR  240
DGGGNNQNAT SSNSWLKLAS GDWS
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g00270
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002889340.21e-137uncharacterized protein LOC9325404
TrEMBLD7KP491e-135D7KP49_ARALL; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_10000181e-136(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM138951318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.11e-23C2H2-like zinc finger protein