PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010559224.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ARR-B
Protein Properties Length: 360aa    MW: 41596.6 Da    PI: 7.1011
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010559224.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like77.31.9e-24181237155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilel...mkvkgLtlehvkSHLQkYRl 55 
                     k+r+ Wt +LH++F++av+ + G+ekA+Pktil++   mkv+gL++++v+SHLQkYRl
  XP_010559224.1 181 KNRMTWTDDLHQKFLQAVNVI-GIEKAVPKTILKCmqeMKVQGLSRNNVASHLQKYRL 237
                     78*******************.**********87622268*****************8 PP
2Response_reg55.43.5e-19251311107
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     +l+vd + + + +l+++++   y +v+++ d+eea+ +lk+ +  +D+++ D+ m g dGl++l   r++  +lp i++++  e e + +a+ +G
  XP_010559224.1  25 ILVVDSDLNYLLVLESMMKLYSY-QVTSCHDAEEAMSCLKTGKekVDIVMWDLHMRGTDGLQALIAVRSRM-DLPFIIMSTDHEREAVMKAMMYG 117
                     79999999999************.***************887777*******************9999987.9999999999999********** PP

                     ESEEEESS--HHHH CS
    Response_reg  94 akdflsKpfdpeel 107
                     a ++l+Kp+++e +
  XP_010559224.1 118 ACQYLVKPVNKETI 131
                     **********9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23002.5E-3122169No hitNo description
SuperFamilySSF521724.41E-2822145IPR011006CheY-like superfamily
SMARTSM004485.2E-1723134IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011034.55524139IPR001789Signal transduction response regulator, receiver domain
PfamPF000728.8E-1625131IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.37E-1726139No hitNo description
Gene3DG3DSA:1.10.10.601.6E-24178241IPR009057Homeodomain-like
PROSITE profilePS512949.989178240IPR017930Myb domain
SuperFamilySSF466891.15E-16179241IPR009057Homeodomain-like
TIGRFAMsTIGR015579.8E-22181238IPR006447Myb domain, plants
PfamPF002495.1E-7183236IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MDAALVPRQP SGTEFSDEFP ANVRILVVDS DLNYLLVLES MMKLYSYQVT SCHDAEEAMS  60
CLKTGKEKVD IVMWDLHMRG TDGLQALIAV RSRMDLPFII MSTDHEREAV MKAMMYGACQ  120
YLVKPVNKET IAVLWQHIAR KTRTRPVRPL TDQTAGSVRD KITTRAGEEE NKGEETAASK  180
KNRMTWTDDL HQKFLQAVNV IGIEKAVPKT ILKCMQEMKV QGLSRNNVAS HLQKYRLNLQ  240
RNNRHPQEDY TCFAESKPSS SMLDNQSNIL NTYLRNHVMN SMTAPELPNR YMTMNNPFIH  300
NNHHHHQHLL TQYPYPYMDQ SVIYQPHPKE EFSHPMVTDT PILDYDSDLL QEPFPFQKQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A4e-14183240357Transcription factor LUX
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010559224.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010559224.10.0PREDICTED: putative two-component response regulator ARR19
STRINGXP_010559224.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137711825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.13e-55response regulator 2