PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010559200.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ERF
Protein Properties Length: 305aa    MW: 33325 Da    PI: 6.3131
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010559200.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.95.8e-1980128355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a+++ + k++g
  XP_010559200.1  80 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDREAIKIRG 128
                     9*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.2E-3879142IPR001471AP2/ERF domain
PROSITE profilePS5103224.05279136IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-3279137IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-2279137IPR016177DNA-binding domain
PfamPF008473.2E-1280128IPR001471AP2/ERF domain
PRINTSPR003677.9E-128091IPR001471AP2/ERF domain
CDDcd000187.52E-3380137No hitNo description
PRINTSPR003677.9E-12102118IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0034059Biological Processresponse to anoxia
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MCGGAIISDF IIRNRGRDVS AADIWPNSSS AKIVGGEFEF ESDPSQLGRG GSFSLKRNRP  60
VSGEGEEAAG RPKRQRKNLY RGIRQRPWGK WAAEIRDPRK GVRVWLGTFN TAEEAARAYD  120
REAIKIRGKK AKVNFPNEDI HFSLPATMNR RKNDPPCHLN PSPNPHLTPP FADLSNTSFG  180
FGNGLNPFPI PDGSNPIQNL GAVRSDSVAE ENSGSSSVLE PANSYSPTAI NGVETKAKEE  240
ENEVQRLSEE LMAFEDYMKF YQIPYLDGQS SMATYAATQV SVVGNLWNFE EAAAVAASPV  300
DSGSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-21801381574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010559200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0025352e-38AC002535.3 Arabidopsis thaliana chromosome 2 clone T30B22 map CIC06C03, complete sequence.
GenBankAY0746452e-38AY074645.1 Arabidopsis thaliana At2g47520/T30B22.18 mRNA, complete cds.
GenBankCP0026852e-38CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010527368.10.0PREDICTED: ethylene-responsive transcription factor ERF071-like
RefseqXP_010541232.10.0PREDICTED: ethylene-responsive transcription factor ERF071-like
RefseqXP_010559200.10.0PREDICTED: ethylene-responsive transcription factor ERF071-like
TrEMBLA0A067K8U52e-89A0A067K8U5_JATCU; Uncharacterized protein
STRINGXP_010527368.10.0(Tarenaya hassleriana)
STRINGXP_010541232.10.0(Tarenaya hassleriana)
STRINGXP_010559200.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.19e-38ERF family protein