PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010559163.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family B3
Protein Properties Length: 300aa    MW: 33706.5 Da    PI: 9.0103
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010559163.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3102.62.1e-3236140199
                     EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.se 89 
                     f+kv tpsdv+k++rlv+pk++ae++    ++++e++  l +ed++g+sW+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  +
  XP_010559163.1  36 FDKVVTPSDVGKLNRLVIPKQHAERYfpldSSSNEKGSLLNFEDRTGKSWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDTVSFQRGvGEiCR 130
                     89****************************55556777*************************************************65577777 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                      +l++ + r+
  XP_010559163.1 131 NRLFIDWKRR 140
                     7777777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.7E-4227144IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.27E-3033142IPR015300DNA-binding pseudobarrel domain
CDDcd100171.32E-2434123No hitNo description
PROSITE profilePS5086314.50836141IPR003340B3 DNA binding domain
PfamPF023621.4E-2936140IPR003340B3 DNA binding domain
SMARTSM010192.4E-2236141IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MNLSVTRTQE GLEEEEEGNR LEFGGSSSNI EKEHMFDKVV TPSDVGKLNR LVIPKQHAER  60
YFPLDSSSNE KGSLLNFEDR TGKSWRFRYS YWNSSQSYVM TKGWSRFVKD KKLDAGDTVS  120
FQRGVGEICR NRLFIDWKRR PQFPDPTSIP HFAGTMFPRP VVTVPRNYGN FLYQNRHHYQ  180
FPPGSGYGFG DSKGRYYVRS LGRNPAEENT VVHGRAHPFV AATAVGKRLR LFGVDMDCCT  240
DPEESSSSGG SVPRGASGTA FSSSSLQLRL ASSEESSMVE AADDHFSKKG KSSLSFDLHI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-66311423115B3 domain-containing transcription factor NGA1
5os9_B3e-66311423115B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010559163.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010559163.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like
SwissprotO827992e-94NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBLA0A1J3IYX31e-97A0A1J3IYX3_NOCCA; B3 domain-containing transcription factor NGA1
STRINGXP_010559163.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13072899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.19e-89B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  4. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  5. Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V
    DNA recognition by Arabidopsis transcription factors ABI3 and NGA1.
    FEBS J., 2018. 285(21): p. 4041-4059
    [PMID:30183137]
  6. Sato H, et al.
    Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187
    [PMID:30397148]