PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010559139.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

Dof

Protein Properties

Length: 325aa MW: 35095.8 Da PI: 8.8392

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010559139.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.9	2.3e-38	46	106	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 + ++l+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGg++r+nk+s XP_010559139.1 46 PPEKLNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGGSSRRNKRSP 106 67899*****************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-28	45	104	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.5E-32	49	104	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.891	50	104	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	52	88	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MINIKAMEQI IPNNTAQPTC TTVTILGSHG DGNGSAAPGV ERKAKPPEKL NCPRCNSTNT 60 KFCYYNNYSL TQPRYFCKGC RRYWTEGGSL RNVPVGGSSR RNKRSPSAIL STSASTLSSS 120 SSSSLGLTTR LPDLNPPILF SGQNPMSTST AQQKGSSQDL KLMSFPVLQD GHHHHNMSRI 180 LQMPNPNCSP SSFYASSTSP VSALELLGTG VSSRGFNAFM PGPMIDSDTV LYSSSGFPTV 240 ADYKPSNLSF FSENIEHNSS SSNGNNRSHE TNEDINGSGR VLFPFSDMKA LSSNENDHQQ 300 QKNQANSSTN AYWSGMFSTT GGPSW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the activation of a component that would trigger germination as a consequence of red light perception.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010559139.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010559137.1	0.0	PREDICTED: dof zinc finger protein DOF2.5-like isoform X2
Swissprot	Q9ZPY0	6e-99	DOF25_ARATH; Dof zinc finger protein DOF2.5
TrEMBL	R0HPY2	1e-114	R0HPY2_9BRAS; Uncharacterized protein
STRING	XP_010559137.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.4	1e-94	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]