PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010559137.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

Dof

Protein Properties

Length: 337aa MW: 36519.4 Da PI: 8.655

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010559137.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.8	2.4e-38	58	118	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 + ++l+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGg++r+nk+s XP_010559137.1 58 PPEKLNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGGSSRRNKRSP 118 67899*****************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-28	57	116	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.6E-32	61	116	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.891	62	116	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	64	100	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MDATKWTQGF QEMINIKAME QIIPNNTAQP TCTTVTILGS HGDGNGSAAP GVERKAKPPE 60 KLNCPRCNST NTKFCYYNNY SLTQPRYFCK GCRRYWTEGG SLRNVPVGGS SRRNKRSPSA 120 ILSTSASTLS SSSSSSLGLT TRLPDLNPPI LFSGQNPMST STAQQKGSSQ DLKLMSFPVL 180 QDGHHHHNMS RILQMPNPNC SPSSFYASST SPVSALELLG TGVSSRGFNA FMPGPMIDSD 240 TVLYSSSGFP TVADYKPSNL SFFSENIEHN SSSSNGNNRS HETNEDINGS GRVLFPFSDM 300 KALSSNENDH QQQKNQANSS TNAYWSGMFS TTGGPSW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the activation of a component that would trigger germination as a consequence of red light perception.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010559137.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010559137.1	0.0	PREDICTED: dof zinc finger protein DOF2.5-like isoform X2
Swissprot	Q9ZPY0	1e-109	DOF25_ARATH; Dof zinc finger protein DOF2.5
TrEMBL	R0HPY2	1e-125	R0HPY2_9BRAS; Uncharacterized protein
STRING	XP_010559137.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2528	26	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.4	1e-105	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]