PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010559070.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB_related
Protein Properties Length: 624aa    MW: 69555 Da    PI: 10.0152
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010559070.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.98.5e-1246100148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqkyl 48 
                      r++W t+E++ll+ avk++G ++W+++a +++       +  t+ +ck ++++++
   XP_010559070.1  46 RKAWGTWEELLLASAVKRHGFRDWDSVAMEVQsrsslprLLTTAQNCKQKYRDLK 100
                      789************************************889*********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.3E-640101IPR009057Homeodomain-like
SuperFamilySSF466891.06E-641102IPR009057Homeodomain-like
PROSITE profilePS512939.5344104IPR017884SANT domain
SMARTSM007172.9E-745102IPR001005SANT/Myb domain
PfamPF002491.5E-1046100IPR001005SANT/Myb domain
CDDcd001671.09E-648100No hitNo description
SMARTSM002978.6E-16283392IPR001487Bromodomain
Gene3DG3DSA:1.20.920.103.3E-15291403IPR001487Bromodomain
CDDcd043695.46E-14294387No hitNo description
SuperFamilySSF473701.96E-16294397IPR001487Bromodomain
PfamPF004394.8E-12299375IPR001487Bromodomain
PROSITE profilePS5001412.347302373IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 624 aa     Download sequence    Send to blast
MMNAGTTTLD AMNDADENYN NTTNDNNNSS GDNLIRDDIN NNRKQRKAWG TWEELLLASA  60
VKRHGFRDWD SVAMEVQSRS SLPRLLTTAQ NCKQKYRDLK RRFEEDGKAE TDDAEDEDDN  120
IPWLEQLRSL RVAELRRELH RYDVSILSLQ LKVKKLEEER DRKLDLDGDS KGDRSENDGT  180
EPARPNSAKA EEESERENMS INESNSTASG GKPGADGQER EESANLDPDP DCKAAKEETW  240
SRGSEVSHSG ELGESGTSEG FGRTWKRKGR KNRSGEEGLV GGEMRSVEGK SEPLISFLEM  300
IRAHSCGSLF ERRFRTQETE EYKSLVRQHL DLETIQKKLE QGYYSASTLS FYRDLHLLFT  360
NALVFFPKSS SESTAAHQLR SLVSIKLNQQ SPKSTSLPLQ SDHPLHVKPD PDTSDLSLTQ  420
LKYPAPLVVC RTRSSVSTKP CFSQRGENKP DEISGEKDKI VASVRSSKRT NKGVSSAAKN  480
IKKQAAPETD SSKDTKQEPP KTGKKTRSSS KKKSVADFLK RIKNSPANSP KKGGGSTGKE  540
QNKSGGSGKK DTKAKQKEQR SNNADKRKPE EHNSTPLKKV TGRQQRKAAS SSGKQGRKTS  600
GSCGGKDSKR PKKRTRSIIL SFDP
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010559070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010559070.10.0PREDICTED: uncharacterized protein LOC104827578 isoform X1
TrEMBLO648771e-173O64877_ARATH; At2g44430
STRINGXP_010559070.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41231947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.11e-152DNA-binding bromodomain-containing protein