PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010558919.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | B3 | ||||||||
Protein Properties | Length: 275aa MW: 30655.8 Da PI: 6.8391 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 94.2 | 9.1e-30 | 73 | 189 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT..................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 f+k ltpsdv+k++rlv+pk++ae++ e+++ l++ede g+ W ++++y+++s++yvltkGW+++v++++L++g XP_010558919.1 73 FEKSLTPSDVGKLNRLVIPKQHAEKYfplngsssavcrggdtaeAAAAEKGMLLRFEDEAGKCWVFRYSYWNSSQSYVLTKGWSRYVREKQLDAG 167 99****************************999999997777664445599******************************************** PP -EEEEEE-SSSEE..EEEEE-S CS B3 78 DfvvFkldgrsefelvvkvfrk 99 D+v F ++++++++ +++++r+ XP_010558919.1 168 DVVFFLRHHSDDRRIFIRWRRR 189 ******98889999*****997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 6.28E-29 | 70 | 189 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.7E-38 | 70 | 189 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.12E-24 | 72 | 172 | No hit | No description |
Pfam | PF02362 | 2.0E-27 | 73 | 189 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.492 | 73 | 190 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.2E-22 | 73 | 190 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010358 | Biological Process | leaf shaping | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MSSVNHYSRD VDQATLWWQH HRCQNDAVSP PETSETWRRN QSLNDVASSL QNDPSSSSCG 60 IEHYPPPLET LLFEKSLTPS DVGKLNRLVI PKQHAEKYFP LNGSSSAVCR GGDTAEAAAA 120 EKGMLLRFED EAGKCWVFRY SYWNSSQSYV LTKGWSRYVR EKQLDAGDVV FFLRHHSDDR 180 RIFIRWRRRG GGGVLVNTTP FSSGVATSTA PPSYHQFHHQ VHASSYPHSG GIAATEAAEN 240 QSAAMGPSSR TVRLFGVDLE CQRDHDDDMA VAADP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 1e-44 | 72 | 189 | 7 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 1e-44 | 72 | 189 | 7 | 113 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010558919.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010558919.1 | 0.0 | PREDICTED: B3 domain-containing protein At5g06250, partial | ||||
Swissprot | Q9FNI3 | 2e-74 | Y5625_ARATH; B3 domain-containing protein At5g06250 | ||||
TrEMBL | V4KRK1 | 9e-75 | V4KRK1_EUTSA; Uncharacterized protein (Fragment) | ||||
STRING | XP_010558919.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1220 | 28 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06250.2 | 1e-61 | B3 family protein |