PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010558868.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | TCP | ||||||||
Protein Properties | Length: 230aa MW: 25270.9 Da PI: 6.9759 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 118.8 | 6.8e-37 | 24 | 137 | 1 | 102 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...ssssasec...eaesssssasnsssg. 88 a+g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l+++ +s+++ + ++++++++a++s + XP_010558868.1 24 ATGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDKLNESqdlPSDPNYQIvdaKDDDNQQTAQFS--Ss 116 589**************************************************************66655555444543333333333333..23 PP TCP 89 ...........kaaksaakskksqk 102 + a+k+ ++++ XP_010558868.1 117 lvapmanldpeD----AMKTVFPTS 137 466666433321....223333333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 6.1E-33 | 25 | 135 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 33.172 | 27 | 85 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MGLKSSGPGG GEIVQVQGGH IVRATGRKDR HSKVYTAKGP RDRRVRLSAH TAIQFYDVQD 60 RLGYDRPSKA VDWLIKKAKS AIDKLNESQD LPSDPNYQIV DAKDDDNQQT AQFSSSLVAP 120 MANLDPEDAM KTVFPTSRTD SNINFHSYPH DIISRTTNLN QDLGLSLHPS FLGNSDQAGS 180 SAADQALFAT FEPNNFQRMS GWNSESTSDQ RGFLVNPSHH QASVATMLNP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-22 | 32 | 85 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 2e-22 | 32 | 85 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010558868.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010558868.1 | 1e-171 | PREDICTED: transcription factor TCP10-like, partial | ||||
Swissprot | O82277 | 1e-70 | TCP10_ARATH; Transcription factor TCP10 | ||||
TrEMBL | A0A1J3IRA7 | 9e-75 | A0A1J3IRA7_NOCCA; Transcription factor TCP10 | ||||
STRING | XP_010558868.1 | 1e-170 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14158 | 19 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31070.1 | 8e-72 | TCP domain protein 10 |
Publications ? help Back to Top | |||
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