PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010558781.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family AP2
Protein Properties Length: 274aa    MW: 30324.8 Da    PI: 7.911
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010558781.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP223.81.2e-0714451955
             AP2 19 Irdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                    ++d      + k+++lg f+ta  Aa+a+++a++k++g
  XP_010558781.1 14 VWD------CgKQVYLGGFDTAHAAARAYDRAALKFRG 45
                    344......45************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103211.601153IPR001471AP2/ERF domain
SMARTSM003802.2E-101459IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-91654IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-111853IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MSVRIFFKDN IINVWDCGKQ VYLGGFDTAH AAARAYDRAA LKFRGMDADI NFGASDYAEE  60
MKQMKNLTKE EFVQVLRRQC NGGGGRNLYK YSKQWEAKPI QPPVARGELF ETPEIGYASG  120
FGTNVYGIRT SFGSSSSQGD MEQNLELSLG LFPRASRTAK AEPGGGIELS RNYMGIMEAR  180
CDNPALLVGI YPDILTNNQR VFEKRTKRDD DNNNNNNMGG CIREMGNGMN AASSRFSSSS  240
ASSSTGPYLP SSTRNDASFT TQVEDLKLYT QKDH
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010558781.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010558781.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X2
STRINGXP_010558780.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.26e-25related to AP2.7