PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010558622.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

MYB

Protein Properties

Length: 337aa MW: 37811.2 Da PI: 6.4033

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010558622.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.6	6.8e-19	19	66	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+d +k++G g+W++ ++ g++R++k+c++rw +yl XP_010558622.1 19 KGPWTPEEDQKLIDHIKRHGHGSWRALPKQAGLNRCGKSCRLRWTNYL 66 79********************************************97 PP
2	Myb_DNA-binding	57.6	3e-18	72	117	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE++ +++++ lG++ W++Ia +++ gRt++++k++w+++l XP_010558622.1 72 RGNFTAEEEQTIINLHSVLGNK-WSSIATHLP-GRTDNEIKNYWNTHL 117 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.0E-26	13	69	IPR009057	Homeodomain-like
PROSITE profile	PS51294	18.559	14	66	IPR017930	Myb domain
SuperFamily	SSF46689	2.48E-32	16	113	IPR009057	Homeodomain-like
SMART	SM00717	1.3E-15	18	68	IPR001005	SANT/Myb domain
Pfam	PF00249	2.0E-17	19	66	IPR001005	SANT/Myb domain
CDD	cd00167	1.42E-12	21	66	No hit	No description
PROSITE profile	PS51294	28.055	67	121	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.9E-28	70	121	IPR009057	Homeodomain-like
SMART	SM00717	7.4E-17	71	119	IPR001005	SANT/Myb domain
Pfam	PF00249	1.3E-16	72	117	IPR001005	SANT/Myb domain
CDD	cd00167	9.07E-13	74	117	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009737	Biological Process	response to abscisic acid
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MNEMRMGRSP GWDEQGLKKG PWTPEEDQKL IDHIKRHGHG SWRALPKQAG LNRCGKSCRL 60 RWTNYLRPDI KRGNFTAEEE QTIINLHSVL GNKWSSIATH LPGRTDNEIK NYWNTHLRKK 120 LLQMGIDPVT HRPRTDHLSV LAAFHQLLAA ANVNNLLNNV QLDATALAKA QMLHNLIQFL 180 NMSSTSSPAA LQTGSSLMGG LSSQENRTIS EYLKALNNKN VGLSADQSQD FSHVLGNSSD 240 LFPNQDDPLA PFSSPNHIVI HDQNSLPPLV PDSPEDSKMK GDDDMVNNTP CPSSISTYAH 300 DHDHQPPWGD IMDDEASDSY WKEFIEQSCS EPWPFSQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-30	17	121	5	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269\|PubMed:24902892}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010558622.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269\|PubMed:24902892}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010558622.1	0.0	PREDICTED: transcription factor MYB3-like
Swissprot	Q9S9Z2	2e-85	MYB93_ARATH; Transcription factor MYB93
TrEMBL	F4KE69	1e-137	F4KE69_ARATH; Myb domain protein 9
STRING	XP_010558622.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02940.1	1e-133	myb domain protein 107

Publications ? help Back to Top
Gibbs DJ,Coates JC AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis. Plant Signal Behav, 2014. 9(10): p. e970406 [PMID:25482809]