PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010558473.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C3H
Protein Properties Length: 481aa    MW: 50574.8 Da    PI: 8.0154
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010558473.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.12.5e-125075227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                    +++ C +++rtG C yG+rC+F+H++
  XP_010558473.1 50 DEPDCIYYLRTGVCGYGSRCRFNHPR 75
                    6899********************96 PP
2zf-CCCH37.73.4e-1297121327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C++f+rtGtCk+G++Ck++H++
  XP_010558473.1  97 QPVCQHFMRTGTCKFGASCKYHHPR 121
                     689********************96 PP
3zf-CCCH406.7e-13142166226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++++C++++rtG+Ck+G++C+F+H+
  XP_010558473.1 142 GEKECSYYMRTGQCKFGATCRFHHP 166
                     7899********************9 PP
4zf-CCCH39.21.1e-12304329126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +++++C++f+rtG Ck+G++C+++H+
  XP_010558473.1 304 PGQPECQYFMRTGDCKFGSSCRYHHP 329
                     5789*********************9 PP
5zf-CCCH31.92.2e-10352375326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                      +lC +fa+ G+Ck+G+ C+F H+
  XP_010558473.1 352 APLCTHFAQHGICKFGPVCRFDHS 375
                     68*********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.2394876IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-44875IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-95075IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-65276IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-55475IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.98694122IPR000571Zinc finger, CCCH-type
SMARTSM003566.5E-794121IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-697122IPR000571Zinc finger, CCCH-type
PfamPF006428.6E-1097121IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-599121IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-6140167IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.427140168IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-6141166IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-10142166IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4146165IPR000571Zinc finger, CCCH-type
SMARTSM003565.3E-7303330IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.126303331IPR000571Zinc finger, CCCH-type
PfamPF006425.6E-10305329IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-6307332IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4309328IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.404349377IPR000571Zinc finger, CCCH-type
SMARTSM003565.5E-6349376IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.01E-5351379IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-7352375IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-4354376IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MERYGRGGEE GSRSDPSPEW SGPGGETGVE ASMWRLGLRS GGESYPERPD EPDCIYYLRT  60
GVCGYGSRCR FNHPRDRGAV MGAARGDAGE FPERVGQPVC QHFMRTGTCK FGASCKYHHP  120
RQGSSSGAPV MLNYMGYPLR PGEKECSYYM RTGQCKFGAT CRFHHPVLPG VQVPSPPPLP  180
AAQVSPVAAQ AIYPAVQSPS VPSSQQYGVV MARPPLLPGS YVQSPYGPMV LPPGMVPYSG  240
WNPYAATVSA IPSPGTQPSI GSSSIYGITP LSPSAPAYTG QYQSGPSNLG PSSTQKEQLF  300
PQRPGQPECQ YFMRTGDCKF GSSCRYHHPL DAVPPSSSLI LSPISLPIRP GAPLCTHFAQ  360
HGICKFGPVC RFDHSVGSLS YSPSASSLTD MPVAPYPVGS ALGTLAPSSS SSDLRPELIS  420
SSSKETVSPK ATTSGSETAP ASATVPSPTV GLSHPEPPAQ TAGDTAGIIS SSSSFEARSS  480
C
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010558473.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010558473.10.0PREDICTED: zinc finger CCCH domain-containing protein 58-like
SwissprotQ6NPN30.0C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLA0A1J3IQY40.0A0A1J3IQY4_NOCCA; Zinc finger CCCH domain-containing protein 58
STRINGXP_010558473.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17792786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.10.0C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]