PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010558453.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

WRKY

Protein Properties

Length: 436aa MW: 48523.2 Da PI: 7.3259

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010558453.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	106	2e-33	251	309	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s++prsYYrCt+agC vkk+vers+ed+++v +tYeg+H h+ XP_010558453.1 251 LDDGYRWRKYGQKAVKNSPYPRSYYRCTTAGCGVKKRVERSSEDTSIVMTTYEGQHSHP 309 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.3E-34	236	311	IPR003657	WRKY domain
SuperFamily	SSF118290	2.22E-29	244	311	IPR003657	WRKY domain
PROSITE profile	PS50811	32.845	246	311	IPR003657	WRKY domain
SMART	SM00774	1.8E-39	251	310	IPR003657	WRKY domain
Pfam	PF03106	1.8E-26	252	309	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence Send to blast
MEKKRDQDHH HHHHHHNQNQ HQLREISSSS SDINQVTATK IEHNHHRCQI QTPSEATISN 60 MANNLLYSSS DHEVAANMGL SSIFFDTASY LYSYSDDVLH SSNNSNSFMD LLRQDHHHFS 120 SSSSSSSSLF DSLAFHNSNP FITDLPLYQP HPSQGPAASP ASTVATAAES PEVLKVTAPA 180 SPHSSSVSSS SNEAGNDNNA TKASGSVIDQ EEQDQQEQKG TKQQLKAKKK SQKRLREPRF 240 AFLTKSDIDH LDDGYRWRKY GQKAVKNSPY PRSYYRCTTA GCGVKKRVER SSEDTSIVMT 300 TYEGQHSHPF PITPRGHIGL LTSPSDMSAA SSFMAQQPRY MLTQHQELML QPYMTTAATT 360 YGNNPLSIIN DISSADPSRR FVNTGFSLQE ERRFGVAENI SRASSSSSSV RDQGLLQDII 420 PSPIRSDNLT KEVEKK

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence Send to blast

MEKKRDQDHH HHHHHHNQNQ HQLREISSSS SDINQVTATK IEHNHHRCQI QTPSEATISN  60
MANNLLYSSS DHEVAANMGL SSIFFDTASY LYSYSDDVLH SSNNSNSFMD LLRQDHHHFS  120
SSSSSSSSLF DSLAFHNSNP FITDLPLYQP HPSQGPAASP ASTVATAAES PEVLKVTAPA  180
SPHSSSVSSS SNEAGNDNNA TKASGSVIDQ EEQDQQEQKG TKQQLKAKKK SQKRLREPRF  240
AFLTKSDIDH LDDGYRWRKY GQKAVKNSPY PRSYYRCTTA GCGVKKRVER SSEDTSIVMT  300
TYEGQHSHPF PITPRGHIGL LTSPSDMSAA SSFMAQQPRY MLTQHQELML QPYMTTAATT  360
YGNNPLSIIN DISSADPSRR FVNTGFSLQE ERRFGVAENI SRASSSSSSV RDQGLLQDII  420
PSPIRSDNLT KEVEKK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	4e-27	239	311	2	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010558453.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010558453.1	0.0	PREDICTED: probable WRKY transcription factor 48
Swissprot	Q9FGZ4	1e-94	WRK48_ARATH; Probable WRKY transcription factor 48
TrEMBL	A0A1J3D998	1e-105	A0A1J3D998_NOCCA; Putative WRKY transcription factor 48
STRING	XP_010558453.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5624	26	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49520.1	1e-85	WRKY DNA-binding protein 48

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]