PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010558349.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 418aa    MW: 45642.8 Da    PI: 6.7909
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010558349.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.56.2e-1874119147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +g+W++eEd  l ++v ++G+++W++Iar ++ gR++k+c++rw + 
   XP_010558349.1  74 KGPWSPEEDAVLSQLVSKFGPRNWSLIARGIP-GRSGKSCRLRWCNQ 119
                      79******************************.***********985 PP
2Myb_DNA-binding59.38.4e-19126170147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r+++T+eEd+++++a++ +G++ W+ Ia+ ++ gRt++ +k++w++ 
   XP_010558349.1 126 RNSFTEEEDQKIIEAHATHGNK-WAVIAKLLP-GRTDNAIKNHWNST 170
                      789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.55269124IPR017930Myb domain
SuperFamilySSF466892.73E-3172167IPR009057Homeodomain-like
SMARTSM007171.5E-1573122IPR001005SANT/Myb domain
PfamPF002494.0E-1774119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-2675127IPR009057Homeodomain-like
CDDcd001671.35E-1476118No hitNo description
SMARTSM007173.5E-18125173IPR001005SANT/Myb domain
PROSITE profilePS5129422.827125175IPR017930Myb domain
PfamPF002491.9E-17126170IPR001005SANT/Myb domain
CDDcd001678.01E-14128171No hitNo description
Gene3DG3DSA:1.10.10.602.4E-25128174IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MSVRIDASAR RYEHLQLSPL AMDGACGRRP ETVSAAREVE EVGAAVPGGG GDGGEDLATF  60
IGEGTSGGGK ERVKGPWSPE EDAVLSQLVS KFGPRNWSLI ARGIPGRSGK SCRLRWCNQL  120
DPSVKRNSFT EEEDQKIIEA HATHGNKWAV IAKLLPGRTD NAIKNHWNST LRRRYMDLEK  180
AKNGSGNVVG DSSFDKTKVS SEETLSSGSG HVAPLVCSEG RETTSMEMPK EQCRERTNAE  240
SISMQESNEP STLFRPVARM SAFNVYNHMA GCSKTASSEM NGQDQMEASK QENTELRLSE  300
GAYNEHFVPQ QCGHGCCSKP LDIHPPRNSL LGPEFVDQLE PEGFPSYDLV AIATDISRLA  360
WLRSGLENSS VRVMEEAVNR LAPQGSGGHL GRADHHHHHS HHHLISDRGK KMANVLST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C8e-423817413158MYB PROTO-ONCOGENE PROTEIN
1h89_C8e-423817413158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00337DAPTransfer from AT3G09230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010558349.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010558349.10.0PREDICTED: myb-like protein Q
SwissprotQ425751e-151MYB1_ARATH; Transcription factor MYB1
TrEMBLD7L7T01e-169D7L7T0_ARALL; ATMYB1
STRINGXP_010558349.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84922636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09230.11e-151myb domain protein 1
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]
  3. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]
  4. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]