PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010558342.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family TALE
Protein Properties Length: 515aa    MW: 56043.7 Da    PI: 7.1253
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010558342.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.52.5e-093503822254
                     SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     ++yp+ +++  LAk++gL+ +qV++WF N R +
  XP_010558342.1 350 HPYPTDTDKLMLAKQTGLSRNQVSNWFINARVR 382
                     89*****************************88 PP
2BELL101.27.8e-33222290472
            BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     e +k k+kL+s+l+eV+krY qy+eq+q++++sFe+vagl +a+p++slAl+a+S+hF+cLk+ai++qi
  XP_010558342.1 222 ETHKMKSKLISMLDEVYKRYAQYYEQIQAIVASFECVAGLANATPFASLALRALSKHFKCLKNAITDQI 290
                     77899***************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.5E-54163288IPR006563POX domain
PfamPF075261.6E-35168287IPR006563POX domain
CDDcd000862.49E-12326387No hitNo description
SMARTSM003895.4E-10326390IPR001356Homeobox domain
SuperFamilySSF466892.4E-17329393IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-27330390IPR009057Homeodomain-like
PfamPF059201.6E-18343382IPR008422Homeobox KN domain
PROSITE profilePS5007111.726345386IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MADAFEPYHV PQQSRRDKLR ILSHSQNPSL DQTHFYFHPP PSAAALFPLV DADLLSSAAG  60
EPHALANFMG FLGGVSVAGS PPSSSAAVAG NRACDQAFNG GDVFVFKPEP LSLSLSSHRG  120
HDHQNNNNDL HRFGTGYDVV VPGCIGSAAS RGSGPLRPLG PFTGYASILK GSRFLWPAQQ  180
LLEEFCNVDR EIYSDRIDDD DSSSMFDPTV ENVAASSGVG GETHKMKSKL ISMLDEVYKR  240
YAQYYEQIQA IVASFECVAG LANATPFASL ALRALSKHFK CLKNAITDQI QFTNNKTQQG  300
QLMSSEKVES LGFGRHGFSD HNPPVWKPHR GLPEHAVTVL RAWLFDHFLH PYPTDTDKLM  360
LAKQTGLSRN QVSNWFINAR VRLWKPMVEE IHMLETRQSQ KSASQSGGGG EKPAQHTSLL  420
KRARNDVPGG DFSGHDLLGF SYDAQNVPVL STNGVSLTLG LHHQNNGLGL TEPFPVNAAQ  480
RFGLGGGGGF EGQNRQFGKD FVGSGSNQLL RDFVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A4e-16332390563Homeobox protein Meis2
4xrm_B4e-16332390563Homeobox protein Meis2
4xrs_A4e-16332389158Homeobox protein Meis1
4xrs_B4e-16332389158Homeobox protein Meis1
5bng_A4e-16332390159Homeobox protein Meis2
5bng_B4e-16332390159Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989, ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:15155890, ECO:0000269|PubMed:16741748}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010558342.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010558342.10.0PREDICTED: BEL1-like homeodomain protein 9 isoform X1
SwissprotQ9LZM81e-162BLH9_ARATH; BEL1-like homeodomain protein 9
TrEMBLR0FE521e-178R0FE52_9BRAS; Uncharacterized protein
STRINGXP_010558342.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56882746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.11e-133TALE family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Pabón-Mora N,Wong GK,Ambrose BA
    Evolution of fruit development genes in flowering plants.
    Front Plant Sci, 2014. 5: p. 300
    [PMID:25018763]
  3. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]
  4. Andrés F, et al.
    Floral Induction in Arabidopsis by FLOWERING LOCUS T Requires Direct Repression of BLADE-ON-PETIOLE Genes by the Homeodomain Protein PENNYWISE.
    Plant Physiol., 2015. 169(3): p. 2187-99
    [PMID:26417007]
  5. Bencivenga S,Serrano-Mislata A,Bush M,Fox S,Sablowski R
    Control of Oriented Tissue Growth through Repression of Organ Boundary Genes Promotes Stem Morphogenesis.
    Dev. Cell, 2016. 39(2): p. 198-208
    [PMID:27666746]
  6. Sehra B,Franks RG
    Redundant CArG Box Cis-motif Activity Mediates SHATTERPROOF2 Transcriptional Regulation during Arabidopsis thaliana Gynoecium Development.
    Front Plant Sci, 2017. 8: p. 1712
    [PMID:29085379]
  7. Simonini S,Stephenson P,Østergaard L
    A molecular framework controlling style morphology in Brassicaceae.
    Development, 2018.
    [PMID:29440299]