PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010558324.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 539aa    MW: 59946.3 Da    PI: 7.6466
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010558324.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.26.6e-1776122148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEd+ l  av+++ g++Wk+Ia+ ++  Rt+ qc +rwqk+l
   XP_010558324.1  76 KGGWTPEEDDTLRTAVTMYKGRSWKKIAEFFQ-DRTEVQCLHRWQKVL 122
                      688*****************************.************986 PP
2Myb_DNA-binding61.32e-19128174148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd++++++vk++G+  W+ Iar ++ gR +kqc++rw+++l
   XP_010558324.1 128 KGPWTQEEDDKIIELVKEFGPTKWSVIARSLP-GRIGKQCRERWHNHL 174
                      79******************************.*************97 PP
3Myb_DNA-binding58.41.7e-18180223146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++WT+eE+  lv+a++++G++ W+ Ia+ ++ gRt++ +k++w++
   XP_010558324.1 180 KDAWTEEEEVALVNAHRRHGNK-WAEIAKGLP-GRTDNAIKNHWNS 223
                      679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.05771122IPR017930Myb domain
SMARTSM007171.9E-1375124IPR001005SANT/Myb domain
PfamPF002494.2E-1576122IPR001005SANT/Myb domain
SuperFamilySSF466899.33E-1577132IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.0E-1878131IPR009057Homeodomain-like
CDDcd001671.69E-1179122No hitNo description
PROSITE profilePS5129429.741123178IPR017930Myb domain
SuperFamilySSF466897.7E-31126221IPR009057Homeodomain-like
SMARTSM007173.9E-18127176IPR001005SANT/Myb domain
PfamPF002493.1E-18128174IPR001005SANT/Myb domain
CDDcd001671.58E-15130174No hitNo description
Gene3DG3DSA:1.10.10.609.8E-27132182IPR009057Homeodomain-like
PROSITE profilePS5129423.259179229IPR017930Myb domain
SMARTSM007172.8E-17179227IPR001005SANT/Myb domain
PfamPF002491.5E-16180223IPR001005SANT/Myb domain
CDDcd001676.28E-13182225No hitNo description
Gene3DG3DSA:1.10.10.602.4E-22183229IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MSCSSNPAAY SGEEEETGEV RRIEDQWMEN KQLTAASSSS VSEGSGNSLL KSTVVASPVT  60
ASPTPGRPTG PIRRAKGGWT PEEDDTLRTA VTMYKGRSWK KIAEFFQDRT EVQCLHRWQK  120
VLNPQLVKGP WTQEEDDKII ELVKEFGPTK WSVIARSLPG RIGKQCRERW HNHLNPCIKK  180
DAWTEEEEVA LVNAHRRHGN KWAEIAKGLP GRTDNAIKNH WNSSLKKKLD FFLDGFPNCV  240
PDTAQDSKQS SATTKPSSSC QNKDSDSVAQ TSSGATDMNK SDEDGRDHHV NSSAPPLEEA  300
AASSKTCLNG YACSPAVENK PQLRNFESFT ENGDRFGTPK HGLLYYKAPP IDFHLPSEAD  360
FQRLYGHSHE CGCCPGTSPV SFFTPPCMKG SSLATRSPES FLREAAKTYP NTPSIFRKRR  420
KISTEKREDN SIGKTDASSG AKETDRKENP EDSSGKSPAR REDLPERTDD CQDKENLGSN  480
GGSAYNLSPP YRLRPKRTAV FRSRQLEFMS EKEKPGDETK SSEVTFEKDK SDGETKSHC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-65752295159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-65752295159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010558324.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by ethylene and salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010558324.10.0PREDICTED: uncharacterized protein LOC104827015 isoform X1
SwissprotQ6R0320.0MB3R5_ARATH; Transcription factor MYB3R-5
TrEMBLR0FDT20.0R0FDT2_9BRAS; Uncharacterized protein
STRINGXP_010558324.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16672887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.20.0myb domain protein 3r-5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  3. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]