PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010558319.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | Dof | ||||||||
Protein Properties | Length: 397aa MW: 42131.4 Da PI: 8.7991 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124.4 | 3.8e-39 | 82 | 141 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e+alkcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+s+ XP_010558319.1 82 EAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSK 141 7789*****************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 6.0E-31 | 65 | 130 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 9.5E-33 | 84 | 139 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.609 | 85 | 139 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 87 | 123 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 397 aa Download sequence Send to blast |
MVFSSFPNYP DPSNWQQQQP ITTTVGITGN DNQQFIPHQP LQPQQQPQHL PPLPHGGGGS 60 SSSVRPGSMA ERARLANVPM PEAALKCPRC ESTNTKFCYF NNYSLSQPRH FCKTCRRYWT 120 RGGALRNVPV GGGCRRNKRS KSGGGGSSSS SNTTSSKSHD GNTSNTATAV NPMGQTSTLS 180 SILSSYNTGL ITGNDHVLGL GSSLPPLKLM APLDPHHDFT NTDNLTFQYG AVSGSSAHHH 240 HHHPDFTAFQ IGSGSGGGGA SGIFSGLEQW RFPATQLPLL GGLDISSPPV SSGLYPFDHQ 300 TGMDPGYGVT GSGQFRPKNM FHNISLSSAA ATAAMVTAAA SQLASVKVED NNNRNNNQDL 360 SRQLLGNTEQ LWNVSAATTS SWSDVSNFSS SSTSNPL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Binds to 5'-TAAAGT-3' motif in REV promoter to triggers its transcription, thus regulating adaxial-abaxial polarity and influencing leaf axial patterning in an auxin transport- and response-dependent manner (e.g. IAA6 and IAA19 genes expression) (PubMed:20807212). Probably involved in early processes for vascular development (PubMed:17583520). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements (PubMed:30626969). {ECO:0000250|UniProtKB:Q9M2U1, ECO:0000269|PubMed:17583520, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:30626969}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00483 | DAP | Transfer from AT5G02460 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010558319.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cytokinin in procambium. {ECO:0000269|PubMed:30626969}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010558319.1 | 0.0 | PREDICTED: dof zinc finger protein DOF5.1-like | ||||
Swissprot | Q9LZ56 | 1e-106 | DOF51_ARATH; Dof zinc finger protein DOF5.1 | ||||
TrEMBL | A0A3P5ZX96 | 1e-122 | A0A3P5ZX96_BRACM; Uncharacterized protein | ||||
STRING | XP_010558319.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11519 | 17 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02460.1 | 7e-79 | Dof family protein |
Publications ? help Back to Top | |||
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