PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010558286.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | MYB_related | ||||||||
Protein Properties | Length: 255aa MW: 28057.1 Da PI: 9.5844 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45 | 2.5e-14 | 42 | 86 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+eE++++++a +++ + Wk+I +g +t q++s+ qky XP_010558286.1 42 RESWTEEEHDKFLEALQLFDRD-WKKIEDFVG-SKTVIQIRSHAQKY 86 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 9.72E-18 | 36 | 92 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.291 | 37 | 91 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 6.9E-19 | 40 | 89 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 2.1E-7 | 40 | 92 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-11 | 41 | 89 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.6E-12 | 42 | 86 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.41E-9 | 44 | 87 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MNSSPPANPS ASQAPPPTTS TDVAEEGSTK KVRKPYTITK SRESWTEEEH DKFLEALQLF 60 DRDWKKIEDF VGSKTVIQIR SHAQKYFLKV QKNGTVAHVP PPRPKRKAAH PYPQKASKNA 120 QVLLHVSSPL PSPSSTLLGY APLDGSSALI NIGSTRVVLP QDELATLRGA EGMGSISRTL 180 SSSKILIQGK QAPVLHGVPD FAEVYNFIGS VFDPETKGHV RKLKEMDPIN FETLQAISFW 240 LLFPVSQFCV LHACC |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator of evening element (EE)-containing clock-controlled genes. Forms a negative feedback loop with APRR5. Regulates the pattern of histone H3 acetylation of the TOC1 promoter. {ECO:0000269|PubMed:21205033, ECO:0000269|PubMed:21474993, ECO:0000269|PubMed:21483796, ECO:0000269|PubMed:23638299}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010558286.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation. Peak of expression in the afternoon. Down-regulated by cold. {ECO:0000269|PubMed:21205033, ECO:0000269|PubMed:22902701, ECO:0000269|PubMed:23638299}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010558286.1 | 0.0 | PREDICTED: protein REVEILLE 8-like isoform X3 | ||||
Swissprot | Q8RWU3 | 1e-123 | RVE8_ARATH; Protein REVEILLE 8 | ||||
TrEMBL | D7L8A7 | 1e-121 | D7L8A7_ARALL; Myb family transcription factor | ||||
STRING | XP_010558284.1 | 1e-171 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G09600.1 | 4e-99 | MYB_related family protein |
Publications ? help Back to Top | |||
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