PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010558285.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | MYB_related | ||||||||
Protein Properties | Length: 282aa MW: 30868.3 Da PI: 9.9145 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.8 | 2.9e-14 | 42 | 86 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+eE++++++a +++ + Wk+I +g +t q++s+ qky XP_010558285.1 42 RESWTEEEHDKFLEALQLFDRD-WKKIEDFVG-SKTVIQIRSHAQKY 86 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.12E-17 | 36 | 92 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.291 | 37 | 91 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 8.1E-19 | 40 | 89 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 2.5E-7 | 40 | 92 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-11 | 41 | 89 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.5E-12 | 42 | 86 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.96E-9 | 44 | 87 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MNSSPPANPS ASQAPPPTTS TDVAEEGSTK KVRKPYTITK SRESWTEEEH DKFLEALQLF 60 DRDWKKIEDF VGSKTVIQIR SHAQKYFLKV QKNGTVAHVP PPRPKRKAAH PYPQKASKNA 120 QVLLHVSSPL PSPSSTLLGY APLDGSSALI NIGSTRVVLP QDELATLRGA EGMGSISRTL 180 SSSKILIQGK QAPVLHGVPD FAEVYNFIGS VFDPETKGHV RKLKEMDPIN FETVLLLMRN 240 LAINLSSPDF EPVRKVLLSY EVNTKLVAGS AESMVKTTDV SS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator of evening element (EE)-containing clock-controlled genes. Forms a negative feedback loop with APRR5. Regulates the pattern of histone H3 acetylation of the TOC1 promoter. {ECO:0000269|PubMed:21205033, ECO:0000269|PubMed:21474993, ECO:0000269|PubMed:21483796, ECO:0000269|PubMed:23638299}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010558285.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation. Peak of expression in the afternoon. Down-regulated by cold. {ECO:0000269|PubMed:21205033, ECO:0000269|PubMed:22902701, ECO:0000269|PubMed:23638299}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010558284.1 | 0.0 | PREDICTED: protein REVEILLE 8-like isoform X1 | ||||
Refseq | XP_010558285.1 | 0.0 | PREDICTED: protein REVEILLE 8-like isoform X2 | ||||
Swissprot | Q8RWU3 | 1e-140 | RVE8_ARATH; Protein REVEILLE 8 | ||||
TrEMBL | D7L8A7 | 1e-139 | D7L8A7_ARALL; Myb family transcription factor | ||||
STRING | XP_010558284.1 | 0.0 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G09600.1 | 1e-116 | MYB_related family protein |
Publications ? help Back to Top | |||
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