PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010558213.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family Trihelix
Protein Properties Length: 544aa    MW: 59165.8 Da    PI: 6.9764
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010558213.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix64.32.7e-20152239186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W++  +  L++a++e+ ++l+rg+l++ +Weev++++  r ++ ++s +qCk+k++nl+kryk++++++++    +ss++p+f+q+e
  XP_010558213.1 152 EWSDAAIAYLLDAYSEKFTQLNRGNLRGRDWEEVAAAVseRCEKQSKSVEQCKNKIDNLKKRYKQERHRMNNVGISASSHWPWFKQME 239
                     5*************************************777778899************************99888999********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.5E-22150241No hitNo description
Gene3DG3DSA:3.40.1160.104.2E-61283529IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536331.3E-49294529IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042541.41E-107296530No hitNo description
PfamPF006961.3E-19297509IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MASCDDDFSL LGDDQTNPNH HHHHHHQGLH APPRRIAFSK PPNQIHAPQH QGNGHADDDN  60
DIVVETSAAF HGVNPFSADE SSNPYDNNAA AEGDLDANRS RVGGVRLEKR QIQEELSDGG  120
TGNDGETTPY GSLKRPRTSS SSAGEYRKDR EEWSDAAIAY LLDAYSEKFT QLNRGNLRGR  180
DWEEVAAAVS ERCEKQSKSV EQCKNKIDNL KKRYKQERHR MNNVGISASS HWPWFKQMEE  240
IVGNSLSSKG ASDDDRTVSS SGNAVKQSRR HALITYSPRV LINHAKSKST SNPRWRRVVL  300
KISGSALACT GSHNIDPKMV MLIAREVATA CSLGVEVAVV VGSRNLFCGD TWISSNGLDR  360
TTGYHISTMA SVMNSILLQS SLEKMGIQAR LQTAFSVQGV GEIYNRQRAI RHLEKGRVVI  420
FGGIGASLGN PLLSSDAAAV LRAIEINAEA VAKGTNVDSV YDCHSRDSNV TFEHIGFQDL  480
ALRGGGVASM DAMALNFCQE NSLPVVVFDF LEPGNISKAL CGEQVGTLID GSGRVGCRSD  540
GMSV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A1e-532875311241Uridylate kinase
3ek5_B1e-532875311241Uridylate kinase
3ek5_C1e-532875311241Uridylate kinase
3ek5_D1e-532875311241Uridylate kinase
3ek5_E1e-532875311241Uridylate kinase
3ek5_F1e-532875311241Uridylate kinase
3ek6_A1e-532875311241Uridylate kinase
3ek6_B1e-532875311241Uridylate kinase
3ek6_C1e-532875311241Uridylate kinase
3ek6_D1e-532875311241Uridylate kinase
3ek6_E1e-532875311241Uridylate kinase
3ek6_F1e-532875311241Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010558213.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010558213.10.0PREDICTED: uncharacterized protein LOC104826936 isoform X1
TrEMBLA0A087H8D30.0A0A087H8D3_ARAAL; Uncharacterized protein
STRINGXP_010558213.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93052631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.10.0Trihelix family protein