PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010558209.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

Trihelix

Protein Properties

Length: 571aa MW: 64556.5 Da PI: 7.7316

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010558209.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	94.8	8.4e-30	123	208	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+e+r++++++++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+y+k+keg+ +r ++ +++++f+qlea XP_010558209.1 123 RWPRQETLTLLEIRSRLDHKFKEANQKGPLWDEVSRIMsEEHGYNRSGKKCREKFENLYKYYRKTKEGKAGR--QDGKHYRFFRQLEA 208 8***********************************999*************************98..55667*****85 PP
2	trihelix	53.7	5.3e-17	418	499	2	81
trihelix 2 WtkqevlaLiearremeerlrr....gklkkplWeevskkmrergf.erspkqCkekwenlnkrykkikegekkrtsessstcpy 81 W + e+ +L+e+r++me+++++ g++++ lWee+s+k+++ gf +rs+ +Ckekwe++ + k k+++kkr +e+ss+c XP_010558209.1 418 WIEAEITKLMEMRTSMESEFQQamagGCSDEFLWEEISAKLARLGFdQRSALTCKEKWEWIVR--KGNKQTNKKR-KEKSSNCGV 499 9******************8555569**************999**********98..5666666665.455556643 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0036	120	183	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	7.155	122	181	IPR017877	Myb-like domain
Pfam	PF13837	1.8E-20	123	209	No hit	No description
CDD	cd12203	1.15E-19	123	188	No hit	No description
SMART	SM00717	66	414	481	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	6.075	418	479	IPR017877	Myb-like domain
Pfam	PF13837	5.0E-10	418	504	No hit	No description
CDD	cd12203	1.11E-15	418	481	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 571 aa Download sequence Send to blast
MEDHHHHPHY GIPELRQLMK GGGGRLTSSS PSPHFPSAAA TIPSELFGFN LGPHHQHHRL 60 QFGDQEMGFV PRGIHGLFID SSAGASNAAN ANATLASTSG NGGVSRGGFG GFLDGGDGGG 120 CGRWPRQETL TLLEIRSRLD HKFKEANQKG PLWDEVSRIM SEEHGYNRSG KKCREKFENL 180 YKYYRKTKEG KAGRQDGKHY RFFRQLEALY GDTNHSVSLP ETQFIGNVNA NPPNSNNPGA 240 VINGLHPLHQ KILTDNSLSL SNNYNSSELD TSSSDDDGNH STRRKRRGWK AKIKEFIDLQ 300 MKRLIERQEA WLERLAKTIE DKEQQRMIRE EEWRRLEAAR IGKEHSFWAR ERERMEARDI 360 ALIEALQCLT GRPLRKAACS SPDERINGNA IQNHSENQNE NGSDQTTNNV CLKGDTGWIE 420 AEITKLMEMR TSMESEFQQA MAGGCSDEFL WEEISAKLAR LGFDQRSALT CKEKWEWIVR 480 KGNKQTNKKR KEKSSNCGVY FPRTDEDPTY NGHGNGYNDN RTSDHHHHHQ LNEHGNGGPV 540 TSNVCFPFFM GDGDQNLWES YGLKLSKGEN Q

Sequence ? help Back to Top

Protein Sequence Length: 571 aa Download sequence Send to blast

MEDHHHHPHY GIPELRQLMK GGGGRLTSSS PSPHFPSAAA TIPSELFGFN LGPHHQHHRL  60
QFGDQEMGFV PRGIHGLFID SSAGASNAAN ANATLASTSG NGGVSRGGFG GFLDGGDGGG  120
CGRWPRQETL TLLEIRSRLD HKFKEANQKG PLWDEVSRIM SEEHGYNRSG KKCREKFENL  180
YKYYRKTKEG KAGRQDGKHY RFFRQLEALY GDTNHSVSLP ETQFIGNVNA NPPNSNNPGA  240
VINGLHPLHQ KILTDNSLSL SNNYNSSELD TSSSDDDGNH STRRKRRGWK AKIKEFIDLQ  300
MKRLIERQEA WLERLAKTIE DKEQQRMIRE EEWRRLEAAR IGKEHSFWAR ERERMEARDI  360
ALIEALQCLT GRPLRKAACS SPDERINGNA IQNHSENQNE NGSDQTTNNV CLKGDTGWIE  420
AEITKLMEMR TSMESEFQQA MAGGCSDEFL WEEISAKLAR LGFDQRSALT CKEKWEWIVR  480
KGNKQTNKKR KEKSSNCGVY FPRTDEDPTY NGHGNGYNDN RTSDHHHHHQ LNEHGNGGPV  540
TSNVCFPFFM GDGDQNLWES YGLKLSKGEN Q

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269\|PubMed:10572040, ECO:0000269\|PubMed:15269176, ECO:0000269\|PubMed:18080804}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010558209.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269\|PubMed:15269176}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010558209.1	0.0	PREDICTED: trihelix transcription factor PTL-like
Swissprot	Q9LZS0	0.0	PTL_ARATH; Trihelix transcription factor PTL
TrEMBL	A0A087G4N0	0.0	A0A087G4N0_ARAAL; Uncharacterized protein
TrEMBL	V4LKD8	0.0	V4LKD8_EUTSA; Uncharacterized protein
STRING	XP_010558209.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2767	28	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	0.0	Trihelix family protein

Publications ? help Back to Top
Quon T,Lampugnani ER,Smyth DR PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana. Front Plant Sci, 2017. 8: p. 152 [PMID:28228771]