PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010558176.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | E2F/DP | ||||||||
Protein Properties | Length: 375aa MW: 40817.5 Da PI: 7.2184 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 87.1 | 1.2e-27 | 103 | 185 | 2 | 71 |
E2F_TDP 2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 ++++Lr++++k ++ek+e+ g++t+neva+eLv+e d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg XP_010558176.1 103 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfadpgnngpspgqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 185 689********...*****999*******************************************************.*******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 7.5E-46 | 98 | 191 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 2.6E-35 | 102 | 185 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 3.4E-25 | 104 | 185 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 5.71E-21 | 105 | 186 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
CDD | cd14458 | 5.34E-44 | 190 | 293 | IPR014889 | Transcription factor DP, C-terminal |
SMART | SM01138 | 6.4E-59 | 192 | 324 | IPR014889 | Transcription factor DP, C-terminal |
SuperFamily | SSF144074 | 2.17E-40 | 192 | 307 | No hit | No description |
Pfam | PF08781 | 1.7E-39 | 193 | 297 | IPR014889 | Transcription factor DP, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042023 | Biological Process | DNA endoreduplication | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 375 aa Download sequence Send to blast |
MTTGSNSSHN QIEDGGAKNN DNNTNPGTRS WGTAGSGQTV STSGSVGSPS SRSEHATMAT 60 PASDSTFLRM NQLDIQGDDA GSQGAVGGKK KKRGQRAVGP DKSGRGLRQF SMKVCEKVES 120 KGRTTYNEVA DELVAEFADP GNNGPSPGQQ QYDEKNIRRR VYDALNVLMA MDIISKDKKE 180 IQWKGLPRTS LSDIEELKTE RLALRNRIDK KAAYLQELEE QYVGLQNLVR RNGRLYSSGN 240 APSGGVALPF ILVQTRPHAT VEVEISEDMQ LVHFDFNTSP FELHDDNFVL KSMKFCERPP 300 PSDNNIPVGN NFPSGDALEG PSIVPPEAFH PHSQPQPQPR LIPTPRADPS GTLPLRAPES 360 PPIPGIIKAR VKPES |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_B | 2e-34 | 96 | 190 | 1 | 93 | PROTEIN (TRANSCRIPTION FACTOR DP-2) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010558176.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010558176.1 | 0.0 | PREDICTED: transcription factor-like protein DPB | ||||
Swissprot | Q9FNY2 | 1e-173 | DPB_ARATH; Transcription factor-like protein DPB | ||||
TrEMBL | D7LWN7 | 0.0 | D7LWN7_ARALL; Uncharacterized protein | ||||
STRING | XP_010558176.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6139 | 26 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03415.1 | 1e-159 | Transcription factor DP |