PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010558140.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HD-ZIP
Protein Properties Length: 215aa    MW: 24892.1 Da    PI: 6.8029
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010558140.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.91.9e-1963115456
                     -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     ++++++eq + Le  F +++++  e++e+LA++lgL+ rqV vWFqNrRa++k
  XP_010558140.1  63 KRKLNEEQANLLELSFGSEHKLESERKERLASELGLDPRQVAVWFQNRRARWK 115
                     45899***********************************************9 PP
2HD-ZIP_I/II116.12e-3762153293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     +kr+l++eq++lLE sF +e+kLe+erK++la+eLgl+prqvavWFqnrRAR+ktk+lE+++++Lk+ +d ++ ++++Le++v +L+e+l+e
  XP_010558140.1  62 RKRKLNEEQANLLELSFGSEHKLESERKERLASELGLDPRQVAVWFQNRRARWKTKKLEEEFSKLKSLHDDVVLQKCHLESQVIKLKEQLSE 153
                     8****************************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003892.2E-1760121IPR001356Homeobox domain
SuperFamilySSF466896.42E-1761118IPR009057Homeodomain-like
PROSITE profilePS5007116.03462117IPR001356Homeobox domain
CDDcd000862.12E-1462118No hitNo description
PfamPF000461.1E-1663115IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.8E-1968116IPR009057Homeodomain-like
PRINTSPR000316.6E-68897IPR000047Helix-turn-helix motif
PROSITE patternPS00027092115IPR017970Homeobox, conserved site
PRINTSPR000316.6E-697113IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MDTHQKMEEH LMFVSHLYPS GPCIQTPPLQ GEAKPPARRR RRRNRGSAPS PAEEMEMGMG  60
ARKRKLNEEQ ANLLELSFGS EHKLESERKE RLASELGLDP RQVAVWFQNR RARWKTKKLE  120
EEFSKLKSLH DDVVLQKCHL ESQVIKLKEQ LSEAEKEIRR FTERSEGASG NNSSASSLSF  180
EAIDVPFFGN FAPETEYDIN PFYIQNMEWI DGPYV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13744RRRRRRNR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010558140.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010558140.11e-159PREDICTED: homeobox-leucine zipper protein ATHB-53
SwissprotO232085e-64ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBLA0A0D2TIR84e-66A0A0D2TIR8_GOSRA; Uncharacterized protein
STRINGXP_010558140.11e-159(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22082677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66700.13e-51homeobox 53
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]