PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010558119.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family G2-like
Protein Properties Length: 297aa    MW: 32209 Da    PI: 6.6817
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010558119.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like96.91.5e-3094147155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     +prl+Wtp+LH+rFv+av++L G+++A+Pkti+++m+v+gLt+e+v+SHLQkYRl
  XP_010558119.1  94 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQMMSVDGLTRENVASHLQKYRL 147
                     59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.87E-2091151IPR009057Homeodomain-like
PROSITE profilePS5129410.8491150IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-3093152IPR009057Homeodomain-like
TIGRFAMsTIGR015573.9E-2495147IPR006447Myb domain, plants
PfamPF002494.8E-897146IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MREEESNWFA RWEEELPSPE ELMPLSQSLI TPDLALAFDI RSPNSDSGQG HPPSATLQPP  60
PPSSQANSSA EFAADSADLG SGAAGDEPAR TLKRPRLVWT PQLHKRFVDA VAHLGIKNAV  120
PKTIMQMMSV DGLTRENVAS HLQKYRLYLK RMQGLSSGGG SGGAVSDPAM DNLFASSPVP  180
AHFLHPTRGP SSDHFMPAFV PMAMLQQQQQ MAATATATAN PHLQPPHFHH RQMTHFGSPT  240
NGQFEHSFLA ARQTQQQGHR MGAALHSTVA NSYGEDLESA NANGGRTVLT LFPPRDD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A3e-3294150157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010558119.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010558117.10.0PREDICTED: transcription factor PCL1-like isoform X2
RefseqXP_010558119.10.0PREDICTED: transcription factor PCL1-like isoform X3
RefseqXP_019059721.10.0PREDICTED: transcription factor PCL1-like isoform X1
SwissprotO222102e-69MYBC1_ARATH; Transcription factor MYBC1
TrEMBLR0HMQ61e-135R0HMQ6_9BRAS; Uncharacterized protein
STRINGXP_010558117.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10760.11e-100G2-like family protein
Publications ? help Back to Top
  1. Sardesai N,Laluk K,Mengiste T,Gelvin S
    The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium.
    Plant Signal Behav, 2018.
    [PMID:24785741]