PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010558038.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | MYB | ||||||||
Protein Properties | Length: 569aa MW: 62861.1 Da PI: 5.174 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.8 | 5.3e-18 | 40 | 87 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WTt Ed +l+d+vk++G g+W+++ ++ g+ R++k+c++rw ++l XP_010558038.1 40 KGPWTTAEDAILIDYVKKHGEGNWNAVQKYTGLSRCGKSCRLRWANHL 87 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 51.7 | 2e-16 | 93 | 136 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++++eE++l++++++++G++ W++ a++++ gRt++++k++w++ XP_010558038.1 93 KGAFSEEEEQLIIELHARMGNK-WARMAAHLP-GRTDNEIKNYWNT 136 799*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.51 | 35 | 87 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-15 | 39 | 89 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.46E-30 | 39 | 134 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.2E-16 | 40 | 87 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.9E-24 | 41 | 94 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.31E-12 | 42 | 87 | No hit | No description |
PROSITE profile | PS51294 | 25.979 | 88 | 142 | IPR017930 | Myb domain |
SMART | SM00717 | 1.0E-16 | 92 | 140 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-15 | 93 | 136 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-25 | 95 | 141 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 569 aa Download sequence Send to blast |
MSHTTDESDD GMYSNHHNEA SGADIGSGCR SRWDGTVLKK GPWTTAEDAI LIDYVKKHGE 60 GNWNAVQKYT GLSRCGKSCR LRWANHLRPN LKKGAFSEEE EQLIIELHAR MGNKWARMAA 120 HLPGRTDNEI KNYWNTRIKR RQRAGLPLYP PEMHVEALQW NQEYTKTEII GPAKRHQDFL 180 QVGNCEPNVL FDSLKVVTGM VPSALDISDI PSCNILGNGA SSSQYKSFIP PLMQSPKRES 240 RSLFSGYCSN IKDEFLSPEE FQSSAQQKIS KSLGFSFPRD ADPPDGNQHY PDVINGSHTL 300 MDAIFPTSSK PSLGTVKSEL PSFQYPETNF DQWNAPSTLH SDLLESVDAY IQSPPPMGRT 360 ETDCYDSCNT GLLDTVLHEA KIRTGAKNGS FSSEKSFSSI TSPDIAAEGI THNDPETKYK 420 EFEGTTLEPL ANSKIPMSMQ LDAGGSSSGE SPSPTNSFAW DNVKMEQWDR IWMPERETNE 480 KTPLLDITRP DVLLASSWLD HGLGLGLAKE TTMSDALVAL LGNEFGNEYM HIAVGTSSSS 540 SSSSSGQAQA VGFCPWSNMP PVCQMTELP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-31 | 29 | 141 | 13 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator of alpha-amylase expression that binds to 5'-CAACTGTC-3' motif in target gene promoter (PubMed:11743113). Positive regulator of abscisic acid (ABA) responses leading to growth arrest during seed germination (PubMed:17217461). In vegetative tissues, inhibits growth by reducing cell proliferation. Promotes the expression of aleurone-related genes (e.g. CP1, CP, GASA1, BXL1 and BXL2) in seeds. Together with MYB65 and MYB101, promotes the programmed cell death (PCD) the vacuolation of protein storage vacuoles (PSVs) in the aleurone layers during seed germination (PubMed:20699403). Binds to a GARE site (GA-response element) in the LEAFY promoter, essential for its gibberellic acid (GA)-mediated induction (PubMed:15226253). Together with MYB65, facilitates anther and tapetum development (PubMed:15722475). {ECO:0000269|PubMed:11743113, ECO:0000269|PubMed:15226253, ECO:0000269|PubMed:15722475, ECO:0000269|PubMed:17217461, ECO:0000269|PubMed:20699403}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010558038.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Accumulates at the shoot apex upon the transition from short- to long-day photoperiods leading to flowering and after gibberellins (GAs) treatment (PubMed:11743113). Repressed by microRNA159 (miR159a and miR159b) in vegetative tissues (PubMed:15226253, PubMed:20699403, PubMed:17916625). Specific expression in floral organs and in the shoot apices is regulated via miR159-mediated degradation (PubMed:15722475). Repressed in germinating seeds by miR159-mediated cleavage in an abscisic acid (ABA) and ABI3-dependent manner, probably to desensitize hormone signaling during seedling stress responses (PubMed:17217461, PubMed:18305205). Slightly induced by ethylene and cytokinins (PubMed:9839469). {ECO:0000269|PubMed:11743113, ECO:0000269|PubMed:15226253, ECO:0000269|PubMed:15722475, ECO:0000269|PubMed:17217461, ECO:0000269|PubMed:17916625, ECO:0000269|PubMed:18305205, ECO:0000269|PubMed:20699403, ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010558039.1 | 0.0 | PREDICTED: transcription factor GAMYB-like isoform X1 | ||||
Refseq | XP_010558040.1 | 0.0 | PREDICTED: transcription factor GAMYB-like isoform X1 | ||||
Swissprot | Q8W1W6 | 0.0 | MYB33_ARATH; Transcription factor MYB33 | ||||
TrEMBL | D7LAN1 | 0.0 | D7LAN1_ARALL; Transcription factor | ||||
STRING | XP_010558038.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3802 | 28 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06100.3 | 0.0 | myb domain protein 33 |